https://github.com/lucventurini/mikado
- HEAD
- refs/heads/attributes_metric_docs
- refs/heads/bugfix-1.2.4
- refs/heads/bumpversion
- refs/heads/fix-configure
- refs/heads/fix-v2.1.2
- refs/heads/hot-fix-configure
- refs/heads/issue-136
- refs/heads/issue-259
- refs/heads/issue-270
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- refs/heads/issue-353
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Tip revision: 47d3ed4072eaaf07f0b0ab79de06c77199e127fc authored by Luca Venturini on 15 October 2018, 10:13:10 UTC
Re-fixed #134. Now Mikado durign the ASE check also always uses the primary transcript CDS length as the denominator (not the minimum between the two compared transcripts).
Re-fixed #134. Now Mikado durign the ASE check also always uses the primary transcript CDS length as the denominator (not the minimum between the two compared transcripts).
Tip revision: 47d3ed4
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema
cython>=0.25
numpy
networkx>=1.10
sqlalchemy>=1
sqlalchemy_utils
biopython>=1.66
intervaltree
nose
pyfaidx
scikit-learn>=0.17.0
scipy>=0.15.0
frozendict
python-magic
drmaa
snakemake<4.0.0; python_version < "3.5"
snakemake; python_version >= "3.5"
docutils!=0.13.1
tabulate
ujson
simplejson
typing; python_version < "3.5"
