https://github.com/lucventurini/mikado
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Tip revision: a35596d39c21f9a0fc86bf690e75fdda57ca7ada authored by Luca Venturini on 30 October 2020, 11:40:04 UTC
Fix #334: now mikado will immediately exit if it cannot find the reference FASTA file.
Tip revision: a35596d
requirements.txt
wheel>=0.28.0
pyyaml
jsonschema>=3.0.1
numpy>=1.16.0
networkx>=2
sqlalchemy>=1.3
sqlalchemy-utils
biopython>=1.78
intervaltree
pytest
pyfaidx
scikit-learn>=0.17.0
scipy>=1.0.0
drmaa
snakemake
docutils!=0.13.1
tabulate
msgpack>=1.0.0
python-rapidjson>=0.8
pandas
jsonref
pysam>=0.15.3
toml
tomlkit
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