https://github.com/cran/ape
Tip revision: 88b62374d892f92ecd45527da6fe3aefd5eb8f3e authored by Emmanuel Paradis on 20 September 2002, 00:00:00 UTC
version 0.2
version 0.2
Tip revision: 88b6237
read.GenBank.Rd
\name{read.GenBank}
\alias{read.GenBank}
\title{Read DNA Sequences from GenBank via Internet}
\usage{
read.GenBank(access.nb, seq.names = access.nb)
}
\arguments{
\item{access.nb}{a vector of mode character giving the accession numbers.}
\item{seq.names}{the names to give to each sequence; by default the
accession numbers are used.}
}
\description{
This function connects to the GenBank databasis, and reads nucleotide
sequences using accession numbers given as arguments.
}
\value{
A list a DNA sequences each made of a single vector of mode character
where each element is a nucleotide.
}
\details{
The function uses the site \url{http://www.ncbi.nlm.nih.gov/} from
where the sequences are downloaded.
}
\seealso{
\code{\link{dist.dna}}
}
\author{Emmanuel Paradis \email{paradis@isem.univ-montp2.fr}}
\examples{
### This won't work if your computer is not connected
### to internet!!!
###
### Get the 8 sequences of tanagers (Ramphocelus)
### as used in Paradis (1997)
ref <- c("U15717", "U15718", "U15719", "U15720",
"U15721", "U15722", "U15723", "U15724")
Rampho <- read.GenBank(ref)
### print the first sequence
### (can be done with `Rampho$U15717' as well)
Rampho[[1]]
### print the first sequence in a cleaner way
cat(Rampho[[1]], "\n", sep = "")
}
\keyword{IO}