https://github.com/cran/Rcpp
Tip revision: b93c35a6f3a6dfc5cff08f1914c0765c52ff0685 authored by Dirk Eddelbuettel on 09 February 2010, 09:16:26 UTC
version 0.7.5
version 0.7.5
Tip revision: b93c35a
ChangeLog
2010-02-08 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.7.5
* debian/*: Similarly updated for new release to Debian
2010-02-07 Romain Francois <francoisromain@free.fr>
* src/RcppSexp.h: class RcppSexp removed (was deprecated)
* src/Rcpp/*.h: defaults copy constructors and assignment
operators have been added for all classes extending RObject.
Otherwise the compiler generates default versions that circumvent
the garbage collection management
2010-02-06 Dirk Eddelbuettel <edd@debian.org>
* inst/examples/functionCallback/newApiExamples.r: Added simpler
version using the new API
* inst/examples/functionCallback/newApiExamples.r: Updated
* inst/unitTests/runit.RcppVector.R: added test for NA/NaN
* inst/unitTests/runit.RcppMatrix.R: idem
2010-02-06 Romain Francois <francoisromain@free.fr>
* src/Rcpp/RObject.h : asFoo methods are deprecated.
* src/Rcpp/DottedPair.h : using R_len_t instead of int
to anticipate future changes in R
* src/Rcpp/VectorBase.h: idem
* src/DottedPair.cpp: idem
* src/VectorBase.cpp: idem
* src/as.cpp: idem
* src/Rcpp/SimpleVector.h: SimpleVector is now only parameterized
by the SEXP type. The c type is automatically retrieved using
the storage_type trait class.
2010-02-05 Dirk Eddelbuettel <edd@debian.org>
* inst/THANKS: Added in order to show our appreciation
2010-02-04 Romain Francois <francoisromain@free.fr>
* src/Rcpp/DottedPair.h: code bloat to allow creation of
DottedPair containing up to 5 objects without variadic templates
RInside for example needs this.
* src/Rcpp/Language.h: same
* src/Rcpp/Pairlist.h: same
* src/Rcpp/grow.h: same
* src/Rcpp/internal/wrap.h : one more level of dispatch to
identify if there needs a cast between the primitive
iterated over and the target storage type. For example
size_t needs a cast to be stored in an integer vector. This
will be useful for the RProtoBuf package with e.g. types like
google::protobuf::int64 which needs to be cast to double.
Consequently the special handling of bool has been withdrawn
as bool can now be assimilated to a primitive type that does
require casting (to int)
2010-02-03 Romain Francois <francoisromain@free.fr>
* src/Rcpp/VectorBase.h: VectorBase gains a names method that
uses the proxy pattern to get or set the names of a vector
* src/Rcpp/DottedPair.h: DottedPair gains a << operator to
add an object to the queue of the list. this is much useful
when variadic templates are not available
* src/Rcpp/RObject.h: support for slot assignment. The slot
method now uses the proxy pattern.
* inst/unitTests/runit.S4.R: unit test for slot assignment
2010-02-02 Romain Francois <francoisromain@free.fr>
* src/internal/r_coerce.h : coercion is now handled by a templated
function r_coerce<int,int>, for example r_coerce<INTSXP,REALSXP>
takes an int, performs coercion and returns a double
* src/traits/has_iterator.h : introduce a trait that uses the
SFINAE idiom to check if a class T has a nested type called
"iterator". This helps wrap dispatch which now uses the
range based wrap implementation in that case
* src/Rcpp/wrap.h: The range based wrap function is exposed
at the Rcpp:: level. The interface is
wrap( InputIterator first, InputIterator last )
and dispatch is performed internally using iterator traits
2010-02-01 Romain Francois <francoisromain@free.fr>
* src/traits/wrap_type_traits.h: new namespace Rcpp::traits::
to host Rcpp type traits used by the template meta programming
dispatching of wrap
2010-01-31 Dirk Eddelbuettel <edd@debian.org>
* doxyfile: several updates plus improvements related to examples/
* src/RcppDoxygenExamples.h: A phony empty file needed mainly to
define a few \example tags for Doxygen
2010-01-31 Romain Francois <francoisromain@free.fr>
* src/Rcpp/internal/wrap.h: more wrap for stl templates are
candidate for wrap (when T can be wrapped)
std::list<T> -> vector or list
std::multiset<T> -> vector or list
std::map<std::string,T> -> named vector or named list
std::multimap<std::string,T> -> named vector or named list
std::tr1::unordered_map<std::string,T> -> named vector or named list
std::tr1::unordered_set<T> -> vector or list
std::tr1::unordered_multiset<T> -> vector or list
* inst/unitTests/runit.wrap.R : unit tests for the new
wrappable types
2010-01-30 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.7.4
* debian/*: Similarly updated for new release to Debian
* inst/unitTests/runit.RcppMatrix.R: also test STL return
* inst/unitTests/runit.RcppVector.R: added
2010-01-30 Romain Francois <francoisromain@free.fr>
* src/Rcpp/internal/wrap.h: rework wrap using traits and
template meta programming. wrap is now really a template
and has many generated specializations. This file is
a private header and should only be included by RcppCommon.h
* src/Rcpp/Language.h: Language gains Function aware constructors
and eval methods
2010-01-28 Romain Francois <francoisromain@free.fr>
* src/Rcpp/DottedPair.h: DottedPair::Proxy are no more lazy, i.e
traversal of the pair list happens at construction time, so
that the proxy can be created once and used many times more
efficiently.
* src/Rcpp/DottedPair.h: Pairlist and Language are now derived
from the new virtual class DottedPair since both class were
almost identical
* src/Rcpp/SimpleVector.h: simple vectors gain a range
based assign method and a range based assign constructor
* inst/unitTests/runit.IntegerVector.R: new unit test
test.IntegerVector.range.constructors
* src/Rcpp/Dimension.h: new class Rcpp::Dimension to support
creation of vectors with dimensions
* src/Rcpp/*Vector.h: using Rcpp::Dimension
* src/Rcpp/SimpleVector.h: data is initialized with 0 when
the object is constructed from size or Dimension constructor
* inst/unitTestsrunit.CharacterVector.R: new unit test to test
constructors using Dimension
* inst/unitTests/runit.IntegerVector.R: idem
* inst/unitTests/runit.GenericVector.R: idem
* R/unit.tests.R: new unexported function "test" to trigger
unit tests using installed test cases
* src/Rcpp/CharacterVector.h: minor bug fix in assign
* inst/unitTest/runit.RcppResultSet.R: compare time using
as.numeric to avoid timezone problems
2010-01-27 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/runit.RcppMatrix.R: added
* inst/unitTests/runit.RcppMatrixView.R: added
* inst/unitTests/runit.RcppVector.R: added
* inst/unitTests/runit.RcppVectorView.R: added
2010-01-27 Romain Francois <francoisromain@free.fr>
* src/Rcpp/CharacterVector.h: CharacterVector gains a default
constructor
* src/Rcpp/CharacterVector.h: CharacterVector gains range
constructors and range based assign methods facilitating
construction from iterators
* inst/unitTests/runit.CharacterVector.R: unit tests for assign
and range based constructors
* src/Rcpp/CharacterVector.h: CharacterVector::StringProxy
gets a printing operator <<(std::ostream& )
* src/Rcpp/Environment.h: removed the static
Environment::RCPP_NAMESPACE which caused problems when
embedding R
* src/Rcpp/RObject.h: RObject::AttributeProxy::operator RObject
replaced by templated implicit conversion operator, delegating the
actual work to as<>.
* src/Environment.h: Binding::operator RObject is removed since
it can be automatically generated by the templated implicit
conversion operator
* man/RcpUnitTests.Rd: fix html rendering
* inst/doc/Makefile: clean the index.html file before copying it
2010-01-26 Dirk Eddelbuettel <edd@debian.org>
* src/RcppDatetime.cpp: New SEXP-based constructor
* src/RcppDatetime.h: idem, bug fix for operator-
* src/RcppDate.h: new accessor getJulian() [relative to epoch
just like R's julian()] to complement getJDN()
* inst/unitTests/runit.RcppDatetime.R: added
2010-01-26 Romain Francois <francoisromain@free.fr>
* src/Rcpp/clone.h: explicit cloning of RObjects. The clone
template function creates a new object of the same class
as the object it is passed in, encapsulating a duplicate
of the SEXP contained by the input RObject.
* src/Rcpp/r_cast.h: new template function to handle casts
from one SEXP to another. This is mostly useful internally
* src/Rcpp/VectorBase.h: VectorBase gains a offset method
that is responsible to calculate the correct offset based
on variable number of size_t arguments. currently the number
of arguments can be 1 (vector indexing) and 2 (matrix indexing)
but arbitrary number of arguments will be added later
for arbitrary array-like indexing.
* src/Rcpp/SimpleVector.h: outsourcing offset calculation
to VectorBase::offset
* src/Rcpp/CharacterVector.h: use offset to implement matrix-like
indexing for matrices of strings
* inst/unitTests/runit.CharacterVector.R: unit test for matrix
indexing (test.CharacterVector.matrix.indexing)
* inst/Rcpp/SEXP_Vector.h: use offset to implement matrix like
indexing on lists
* inst/unitTests/runit.GenericVector.R: unit test for matrix
indexing (test.List.matrix.indexing)
2010-01-26 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/runit.RcppDate.R: added
2010-01-25 Romain Francois <francoisromain@free.fr>
* src/Rcpp/wrap.h: wrap is back at being a template. The
template parameter T is first converted to SEXP implicitely
and the wrap(SEXP) method is used. This allows clients to only have to
implement an implicit conversion to SEXP operator for their class
and have wrap for free.
* src/Rcpp/SEXP_Vector.h: factored out ExpressionVector and
GenericVector into a templated SEXP_Vector class parameterized
by the SEXP type (VECSXP or EXPRSXP). GenericVector and
ExpressionVector now are generated from the template. This will
ease adding features to both classes.
* src/as.cpp: also use coercion for as<bool>, as<int>, as<double>
as<Rbyte> (FR #768)
* src/Rcpp/as.h: smarter template as<T>, now the template
attempts to create an object by passing the SEXP as the first
parameter, so any class that has a constructor taking a SEXP
can be as<>'ed. see item below for how this can be useful
* src/Rcpp/Environment.h: lhs use of Environment::Binding is now
a bit smarter and uses as<> to implicitely convert the SEXP
to the requested type, so that if as<Foo> makes sense, this
works: Foo foo = env["x"] ;
* src/Rcpp/Environment.h: Environment::assign gains a templated
form so that we can assign anything that can be wrapped to
a name in an environment.
* inst/unitTests/runit.environments.R: new unit test
'test.environment.assign.templated' to test the templated assign
* src/Makevars(.win?): listen to the RCPP_CXX0X environment variable
and if set to "yes" attempt to add c++0x support if possible
2010-01-24 Dirk Eddelbuettel <edd@debian.org>
* configure.in: Withdrawn as OS X universal binaries are only built
when there is src/Makevars and neither src/Makefile nor configure
* configure: idem
* src/Makevars: Again a static file, content copied from Makevars.in,
-std=c++0x selection back to simply unabling a comment
2010-01-24 Romain Francois <francoisromain@free.fr>
* src/SimpleVector.h : new template to replace simple vector
classes. now NumericVector, IntegerVector, LogicalVector,
ComplexVector and RawVector are all generated from the same
template class. A first attempt at matrix indexing is added
as part of this.
* inst/unitTests/runit.NumericVector.R: new unit tests about
matrix indexing
* src/Rcpp/VectorBase.h: added the exception not_a_matrix
that is thrown when attempting to perform matrix indexing on
a vector that is not a matrix.
2010-01-23 Dirk Eddelbuettel <edd@debian.org>
* inst/unitTests/runit.RcppParams.R: added
* inst/unitTests/runit.RcppResultSet.R: added
2010-01-23 Romain Francois <francoisromain@free.fr>
* src/wrap.cpp: s/copy/std::copy/
* src/RcppDateTime.h: explicitely include <time.h> (win64 warning)
2010-01-22 Romain Francois <francoisromain@free.fr>
* src/Makevars.win: disable c++0x entirely (for now)
* src/Rcpp/Environment.h: make sure what() is const. (suncc finding)
* src/RcppCommon.h: pre declare classes, as an attempt to
deal with the suncc warning "RObject may not have a type qualifier."
* src/Rcpp/*.h: make sure RcppCommon.h is the first included header
* src/*cpp: make sure foo.cpp only include Rcpp/foo.h
* src/Environment.cpp: use Evaluator instead of R_ToplevelExec
* src/RcppFunction.{h,cpp}: listen to some suncc warnings
* src/RcppFrame.cpp: listen to some suncc warnings
* src/as.cpp: use transform instead of assign, which should
make the code more portable (particularly suncc) and also
deal with coercion
2010-01-21 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.7.3
* debian/*: Similarly updated for new release to Debian
* INDEX: updated
* configure.in: Some more small cleanups
* inst/skeleton/Makevars.win: Add missing default file
2010-01-21 Romain Francois <francoisromain@free.fr>
* configure.in: Some small cleanups, add RCPP_CXX0X env var
2010-01-20 Romain Francois <francoisromain@free.fr>
* src/*: make update private virtual in RObject and couple it with
setSEXP so that it gets called automatically, instead of manually
* src/*: move more code depending on c++0x from cpp files to header
files
2010-01-20 Dirk Eddelbuettel <edd@debian.org>
* configure.in: Detect C++ capabilties (via g++ major/minor) via
small C++ program embedded in autoconf macro
2010-01-19 Romain Francois <francoisromain@free.fr>
* configure.in: use the cxx0x.R script to discover if the
compiler being used is c++0x capable
* configure: regenerated from updated configure.in
* src/Makevars.in: using CLINK_CPPFLAGS variable
* src/Makevars.win: using CLINK_CPPFLAGS variable with the
cxx0x.R discovery script
2010-01-18 Dirk Eddelbuettel <edd@debian.org>
* R/RcppLdpath.R: Rewrote logic for LdFlags() to decide when linking
is static: default now is everywhere but Linux, and choices can be
overriden as before
2010-01-18 Romain Francois <francoisromain@free.fr>
* inst/discovery/cxx0x.R: replaces the cxx0x.c file to take
care of compiling, etc...
2010-01-17 Romain Francois <francoisromain@free.fr>
* src/exceptions.cpp: slightly less dumb exception logic
on non GCC compilers. exceptions will now trigger an R error
with a default message (we don't attempt to get the
exception class or message because we don't know how to)
* src/Rcpp/Pairlist.h: Pairlist lacked a default constructor
which is needed when the variadic templates are not
available
* inst/unitTests/*: add -std=c++0x in inline when necessary
* R/RcppLdPath.R : new script RcppCxx0xFlags() and Cxx0xFlags()
that compile, load and call a simple C file in order to check
the compiler version and add the -std=c++0x flag
* inst/discovery/cxx0x.c: discovery script. simple C script that
returns "-std=c++0x" if it is compiled with GCC >= 4.3 and
"" otherwise
2010-01-16 Dirk Eddelbuettel <edd@debian.org>
* src/Rcpp/*h: call Rf_length() etc as ::Rf_length() to ensure we get
the one from the top-level namespace
2010-01-16 Romain Francois <francoisromain@free.fr>
* src/Rcpp/Environment.h: Environment gains a new_child method
to create an environment enclosed by this
* inst/unitTests/runit.environments.R: unit test for new_child
* src/Rcpp/ExpressionVector.h: ExpressionVector gains a
convenience methods eval to evaluate itself
* inst/unitTests/runit.ExpressionVector.R: added unit tests
for ExpressionVector::eval
* src/Rcpp/ExpressionVector.h: ExpressionVector gains a
constructor ExpressionVector( const std::string& ) that
parses the string as R code
* inst/unitTests/runit.ExpressionVector.R: added unit tests
to cover the new constructor
* src/Rcpp/Environment.h : the Rcpp namespace is cached because
we use it in many places and retrieving it is an "expensive"
operation that requires a round trip to the R side
* src/Evaluator.cpp: use the cached Rcpp namespace
* R/Rcpp.package.skeleton: now generating example C++ and R
code that uses Rcpp, also the generated Makevars contains
a hack so that the generated package can pass check (after
edition of Rd files, NAMESPACE, etc ...)
* inst/skeleton: added example code used by the skeleton
generator
2010-01-15 Romain Francois <francoisromain@free.fr>
* src/Rcpp/NumericVector.h: cache the start of the array to
improve performance of operator[]
* src/NumericVector.cpp: idem
* src/Rcpp/IntegerVector.h:
* src/Rcpp/RawVector.h:
* src/Rcpp/ComplexVector.h:
* src/Rcpp/LogicalVector.h: idem
* src/IntegerVector.cpp:
* src/RawVector.cpp:
* src/ComplexVector.cpp:
* src/LogicalVector.cpp: idem
2010-01-13 Romain Francois <francoisromain@free.fr>
* R/cpp.package.skeleton.R: new function cpp.package.skeleton
to extend the code generation performed by package.skeleton
to Rcpp features
* man/cpp.package.skeleton.Rd: documentation for cpp.package.skeleton
* src/Rcpp/VectorBase.h: new virtual class Rcpp::VectorBase
to manage common things of all vectors (length, names, etc ...)
all Vector classes now derive from VectorBase
* src/Rcpp/Environment.h: Environment::Binding gains a templated
conversion operator, to facilitate distance 2 implicit conversion
making this possible:
Environment env("package:stats") ;
Function f = env["rnorm"] ;
* src/Rcpp/GenericVector.h: GenericVector::Proxy gains an
assignement operator to deal with Environment::Binding. This is
to work around distance 1 implicit conversion restrictions
* src/Rcpp/NumericVector.h: operator[], begin and end are
promoted to inline member functions
* src/Rcpp/IntegerVector.h: idem
* src/Rcpp/RawVector.h: idem
* src/Rcpp/LogicalVector.h: idem
2010-01-12 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.7.2
* debian/*: Similarly updated for new release to Debian
* .Rbuildignore: Add 'inst/doc/{html,latex,man} as we no
longer ship the voluminous doxygen-generated content
* inst/doc/examples/ConvolveBenchmarks/convolve2*: Added simple
benchmark on the well-known vector convolution example from
'Writing R Extensions' to compare C and C++ implementations
* inst/doc/examples/ConvolveBenchmarks/buildAndRun.sh: idem
inst/doc/examples/ConvolveBenchmarks/exampleRCode.r: idem
2010-01-12 Romain Francois <francoisromain@free.fr>
* inst/doc/examples/ConvolveBenchmarks/convolve2*: Added additional
C++ examples to convolution benchmark highlighting performance gains
2010-01-11 Romain Francois <francoisromain@free.fr>
* src/Rcpp/CharacterVector.h: StringProxy gains operator+=
* src/CharacterVector.cpp: implementation
* src/Rcpp/*Vector.h: operator[] now throws index out of bounds
exception when needed (FR#770)
* src/*Vector.cpp: same
* src/Rcpp/Environment.h: operator[](string) for environment
allowing to get/set values of a binding in this environment.
The Environment::Binding class has been created to act as
a proxy.
* src/Environment.cpp: idem
* inst/unitTests/runit.environments.R: unit tests for the above
2010-01-10 Romain Francois <francoisromain@free.fr>
* src/Rcpp/Pairlist.h: operator[] for pairlist using proxies
* src/Pairlist.cpp : idem
* inst/unitTests/runit.Pairlist.R: new unit tests
* src/Rcpp/Language.h: same for Language
* src/Language.cpp : idem
* inst/unitTests/runit.Language.R: new unit tests
* inst/unitTests/runit.Function.R: added unit test for function
throwing exceptions
* src/Function.cpp: grab the condition message and not the call
2010-01-09 Romain Francois <francoisromain@free.fr>
* src/Rcpp/RObject.h: attr can now be used to get or set the
attribute (used to be read only). This is another manifestation
of the proxy pattern. The rhs can be anything wrap can handle
* inst/unitTests/runit.RObject.R: added test.RObject.attr.set
unit test (setting attribute).
* src/Rcpp/Function.h: Function::operator() now throws an
exception if an R error occurs.
2010-01-08 Dirk Eddelbuettel <edd@debian.org>
* configure.in: provide basic support for c++ compiler version detection
at build-time so that we can add -std=c++0x when applicable;
provide defaults in case we do not use g++
* src/Makevars.in: copied from Makevars, set C++ flags from configure
* configure.win: simply log what g++ version is being used
2010-01-08 Romain Francois <francoisromain@free.fr>
* src/Rcpp/wrap.h: added wrap( size_t ) to disambiguate it
* int/unitTests/runit.XPTr.R: forgot to set the finalizer on the
external pointer
* src/Rcpp/Pairlist.h: Pairlist gains a push_back, replace,
length, size, remove and insert methods
* src/Rcpp/Language.h: idem for Language
2010-01-07 Romain Francois <francoisromain@free.fr>
* src/Rcpp/Pairlist.h: gains a push_front method
* src/Rcpp/wrap.h : now the result type of the various wrap
functions depends on the parameters. wrap( bool ) makes a
LogicalVector, etc ... wrap(SEXP) dispatches to the
appropriate Rcpp:: class depending on TYPEOF
* src/Rcpp/RObject.h: added methods "isS4", "slot"
and "hasSlot" to deal with S4 objects
* inst/unitTests/runit.S4.R: unit tests
* src/Rcpp/ComplexVector.h: new class Rcpp::ComplexVector
to manage ... complex vectors (CPLXSXP)
* src/ComplexVector.cpp: implementation
* inst/unitTests/runit.ComplexVector.R: unit tests
* src/Rcpp/Promise.h: new class Rcpp::Promise to manage
promises (PROMSXP). only read access so far (no way to force
the promise)
* src/Promise.cpp: implementation
* src/Rcpp/RObject.h: the result of attr is now an RObject
rather than a SEXP. This does not change previous behavior
because of the implicit conversion
* src/Rcpp/ExpressionVector.h: new class Rcpp::ExpressionVector
which shares a lot with GenericVector.
* src/ExpressionVector.cpp: implementation
* inst/unitTests/runit.ExpressionVector.R: unit tests
* src/Rcpp/CharacterVector.h: new class Rcpp::CharacterVector
to manage character vectors (STRSXP). StringVector is a
convenience typedef equivalent to CharacterVector
* src/CharacterVector.cpp: implementation
* inst/unitTests/runit.CharacterVector.R: unit tests
* src/Rcpp/WeakReference.h: new class Rcpp::WeakReference
to wrap WEAKREFSXP with accessors to the key and value
* src/WeakReference.cpp: implementation
* src/Rcpp/Rcpp_Rinternals.h: borrowed from Rinternals so that
we can use VECTOR_PTR (which R forbids unless we define
USE_RINTERNALS, but defining it disables NO_R_REMAP)
* src/Rcpp/GenericVector.h : added begin and end to allow
stl type iteration over generic vectors. Now using the
Proxy pattern (from Item 30 of More Effective C++) to
allow getting and setting the elements of the list through
the operator[].
* int/unitTests/runit.GenericVector.R: examples are reworked
using [] where set and get were used.
2010-01-06 Dirk Eddelbuettel <edd@debian.org>
* src/RcppCommon.h: Protect definition of logTxt by #ifndef
* inst/doc/Rcpp-unitTests.Rnw: Minor LaTeX tweak
2010-01-06 Romain Francois <francoisromain@free.fr>
* src/Rcpp/wrap.h : wrap can now use initializer lists (available
on on GCC >= 4.4).
* src/wrap.cpp: implementation
* int/unitTests/runit.wrap.R: unit tests
* src/RObject.cpp : make methods RObject::asFoo
calling Rcpp::as<Foo> to avoid code duplication
2010-01-05 Romain Francois <francoisromain@free.fr>
* src/Rcpp/GenericVector.h : new class Rcpp::GenericVector
and an alias Rcpp::List to handle lists (VECSXP), aka generic
vectors
* src/GenericVector.cpp : implementation
* inst/unitTests/runit.GenericVector.R: unit tests
* src/Rcpp/IntegerVector.h : new class Rcpp::IntegerVector
to manage integer vector (INTSXP). IntegerVector can be
constructed from SEXP of appropriate type, from an int which
simply allocates a vector that big, or using an
initialization list (the last is GCC >= 4.4 only).
Additionally IntegerVector defines begin() and end() so that
they can be used in STL algorithms
* src/IntegerVector.cpp : implementation
* inst/unitTests/runit.IntegerVector.R: unit tests
* src/Rcpp/NumericVector.h : same as above, but for numeric
vectors (REALSXP)
* src/NumericVector.cpp : implementation
* inst/unitTests/runit.NumericVector.R: unit tests
* src/Rcpp/RawVector.h : same as above, but for numeric
vectors (RAWSXP)
* src/RawVector.cpp : implementation
* inst/unitTests/runit.RawVector.R: unit tests
* src/Rcpp/LogicalVector.h : same as above, but for numeric
vectors (RAWSXP)
* src/LogicalVector.cpp : implementation
* inst/unitTests/runit.LogicalVector.R: unit tests
* src/RcppCommon.h: improve the conditional compiling logic
with macros HAS_VARIADIC_TEMPLATES and HAS_INIT_LISTS instead
of CXX0X. This ensures the package can be compiled with
older GCC, with lower functionality
* src/RcppCommon.{h,cpp}: added a capabilities function that
can be used to bring the result of the two above macros to R
* R/RcppLdPaths.R: added unexported function RcppCapabilities
to call the internal capabilities. capabilities is an alias
to RcppCapabilities so that we can call Rcpp::capabilities()
2010-01-04 Romain Francois <francoisromain@free.fr>
* src/Rcpp/Function.h: new class Rcpp::Function to manage functions
(closures, primitives and builtins) all share the Function class
(at least for now). This is implemented as a functor taking
variable number of arguments, so it looks pretty similar to the
R function
* src/Function.cpp: implementation
* inst/unitTests/runit.Function.R: unit tests
* src/Rcpp/Pairlist.h: new class Rcpp::Pairlist to manage dotted
pair lists (LISTSXP). unsurprisingly this shares a lot of
similarities with Language class
* src/Pairlist.cpp: implementation
* inst/unitTests/runit.Pairlist.R: unit tests for Rcpp::Pairlist
* src/Rcpp/wrap.h: wrap no more a template. this was not a good
idea as it prevented implicit conversion to SEXP behavior when
wrap'ing a RObject.
* src/Rcpp/Environment.h: added the remove method
* src/unitTests/runit.environments.R: remove unit test
* src/unitTests/runit.Language.R: remove verbose=TRUE in cfunction
call (generated noise)
* src/wrap.cpp: added a few missing PROTECT
2010-01-04 Dirk Eddelbuettel <edd@debian.org>
* src/excections.cpp: Get rid of another unused variable
* src/RcppCommon.cpp: Idem
2010-01-03 Romain Francois <francoisromain@free.fr>
* src/Rcpp/Environment.h: Environment gains the parent
method that returns the parent environment
* src/Rcpp/as.h: template as<> to convert SEXP to classic
C++ types, factored out of RObject
* src/as.cpp: specific implementations. as<int>, as<bool>
as<string>, ...
* inst/unitTests/runit.as.R: unit tests
* src/Rcpp/wrap.h : factored out from RObject. there is now a
template wrap in addition to the specific implementations. The
template generates a warning and return NULL
* src/wrap.cpp: specific implementations of the wrap template
(factored out of RObject)
* src/Rcpp/pairlist.h : variadic templates to
recursively generate a pairlist
(CAR and CDR) from any number of "wrap("'able objects.
(factored out of Language)
* src/pairlist.cpp: end of recursion for the above
* src/Rcpp/grow.h : grow a pairlist with any wrappable
object. Used in pairlist
* src/grow.cpp : specific implementation for Named object
to allow tagging the head of the pairlist.
* src/Rcpp/Named.h : new class Named that is used to specify
named elements in a pairlist.
* src/Named.cpp: implementation
* src/Rcpp/RObject.h: added wrap(const char* const) RObject factory
method
* src/Rcpp/RObject.h: rework the garbage collection mechanism so that
it is automatic and hidden. methods preserve and release are now
private to the RObject class and the SEXP may only be changed using
the protected setSEXP member function. isPreserved and forgetPreserve
are defunct.
* src/Rcpp/RObject.h: RObject gains assignment operators and copy constructors
* src/RcppCommon.h: added the CXX0X define that controls whether
we can use C++0x features offered by the gcc. currently the define
is hardcoded, but this will eventually be a configure guess. The
canUseCXX0X function can be called to bring this back to R
* R/RcppLdPath.R: added the canUseCXX0X R function to query
the internal canUseCXX0X function, use this in RcppCxxFlags so that
code linking against Rcpp (inline code or packages) can take
advantage of it
* src/Rcpp/Language.h : new class Rcpp::Language to manage calls
(LANGSXP SEXP)
* src/Language.cpp : implementation
* inst/unitTests/runit.Language.R: unit tests
* src/Rcpp/Environment.h : added constructors and made the SEXP based
constructor smarter (using as.environment)
* inst/unitTests/runit.environments.R: more unit tests
* src/Rcpp/Symbol.h: new class Rcpp::Symbol to encapsulate
symbols. This allows to use Symbol("rnorm") instead of the most cryptic
Rf_install("rnorm")
* src/Symbol.cpp: implementation
* inst/unitTests/runit.Symbol.R: unit tests
2010-01-03 Dirk Eddelbuettel <edd@debian.org>
* doxyfile: updated to current doxygen standard using -u
2010-01-02 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.7.1
* debian/*: Similarly updated for new release to Debian
2010-01-02 Romain Francois <francoisromain@free.fr>
* pkg/src/RcppSexp.h: Added to preserve existing interface,
implementation use the redesigned class src/RObject.h
2010-01-01 Romain Francois <francoisromain@free.fr>
* pkg/src/Rcpp/RObject.h: RObject::RObject constructors are
replaced by the Rcpp::wrap set of functions. Currently the wrap
functions make a RObject object but it is likely that as new
classes become available in the new API, wrap will return
instances of classes that extend RObject.
* pkg/src/Rcpp/RObject.h: s/protect/preserve/, added methods
isPreserved and forgetPreserve
* ** : adapted examples, code, and unit tests to reflect both
above items
2009-12-31 Romain Francois <francoisromain@free.fr>
* src/Rcpp/Evaluator.h : new class Rcpp::Evaluator that eases
evaluation of R expression with error capture. so that we can for example
throw C++ exceptions
* src/Evaluator.cpp : implementation of Rcpp::Evaluator
* inst/unitTests/runit.evaluator: unit tests of Rcpp::Evaluator
* inst/Rcpp/RObject.h: RObject::RObject(SEXP) now initializes isProtected
* inst/src/Environment.cpp: use of exceptions
2009-12-30 Romain Francois <francoisromain@free.fr>
* src/Rcpp/Environment.h : added support for environment through the
Rcpp::Environment class
* src/Environment.cpp: idem
* inst/unitTests/runit.environments.R: testing the above
* src/RcppCommon.h: now includes <R_ext/Callbacks.h>, needed for the
environment support
2009-12-30 Romain Francois <francoisromain@free.fr>
* src/Makevars* : adapt for allowong copy of the Rcpp directory
* src/Rcpp_RObject.h: replace by src/Rcpp/RObject.h
* src/Rcpp_XPtr.h: replaced by src/Rcpp/XPtr.h
* src/*.cpp: adapt to the Rcpp directory
* cleanup: idem
2009-12-30 Romain Francois <francoisromain@free.fr>
* inst/unitTests/runit.RObject.R: new unit tests
* inst/unitTests/runit.exceptions.R: idem
* inst/unitTests/runit.XPtr.R: idem
* man/RcppUnitTests.Rd: shows and link unit test reports generated at
build time
2009-12-29 Romain Francois <francoisromain@free.fr>
* src/Rcpp_RObject.{h,cpp}: new namespace Rcpp and new class
Rcpp::RObject to replace RcppSexp with the same functionality.
* src/Rcpp_XPtr.h: replaces RcppXPtr.h and the class is now
Rcpp::XPtr<> and extends Rcpp::RObject
* inst/examples/RcppInline/external_pointer.r: use the new namespace
* inst/examples/RcppInline/RcppInlineWithLibsExamples.r: idem
* inst/examples/RcppInline/RcppSexpTests.r: idem
* DESCRIPTION: marked as version 0.7.0.5
* inst/doc/*: fake (empty) vignette and unit test trigger
* inst/unitTests/*: prepare the space for unit tests
* tests/doRUnit.R : added the usual RUnit tests trigger
2009-12-29 Romain Francois <francoisromain@free.fr>
* src/RcppXPtr.h: now RcppXPtr extends RcppSexp and RcppSexp manages
garbarge collection, attributes, etc ...
* src/exceptions.cpp: replaces src/exception_handling.cpp
* DESCRIPTION: now suggesting RUnit.
2009-12-29 Romain Francois <francoisromain@free.fr>
* src/RcppXPtr.h: added operator SEXP() to class
RcppXPtr to ease implicit conversion from RcppXPtr to SEXP.
This means we can directly return the RcppXPtr object to R when the
return type of the function is SEXP. (no need to explicitely call
asSexp anymore)
* src/RcppSexp.{h,cpp} : idem
2009-12-29 Romain Francois <francoisromain@free.fr>
* src/RcppXPtr.h: new smart external pointer wrapper. The RcppXPtr
template can be used to wrap a external pointer (SEXP) so that it
looks like the dumb pointer it is wrapping (as far as the * and ->
operator are concerned). The template parameter controls the type
of object that is wrapped by the pointer.
* src/Rcpp.h: importing the RcppXPtr.h header
* src/RcppExample.cpp: added an example of RcppXPtr usage
* inst/examples/RcppInline/external_pointer.r: added example using
the RcppXPtr template
* DESCRIPTION: marking this as 0.7.0.4
2009-12-28 Romain Francois <francoisromain@free.fr>
* R/exceptions.R: s/uncaught_cpp_exception/cpp_exception/ and added a
'class' argument to hold the class name of the C++ exception
(range_error, etc ...)
* inst/examples/RcppInline/UncaughtExceptions.r: extend examples to
show how to grab details of the C++ exception
* src/exception_handling.cpp: factored out from RcppCommon.cpp, now
able to grab the class name of the exception and its message.
2009-12-27 Dirk Eddelbuettel <edd@debian.org>
* R/RcppInline.R: Removed as we now use cfunction() from inline (>= 0.3.4)
* man/{RcppInline,internals}.Rd: idem
* NAMESPACE: removed entries related to cfunction and methods
* DESCRIPTION: Added 'Suggests: inline (>= 0.3.4)
* inst/examples/RcppInline/*R: Add library(inline) or require(inline)
2009-12-27 Romain Francois <francoisromain@free.fr>
* src/RcppCommon.{h,cpp} : added experimental uncaught exception
management
* R/zzz.R : added .onAttach, used to register the uncaught exception
management on package attach
* R/exceptions.R : added R side of the exception management, unexported
as it is only used by internal C++ code
* inst/examples/RcppInline/UncaughtExceptions.r: demo of the
uncaught exception system
* src/RcppSexp.{h,cpp} : added method isNULL to test if the
underlying SEXP is NULL
* src/RcppSexp.{h,cpp} : added some methods to deal with attributes
attributeNames : the names of the attributes as a vector<string>
hasAttribute : test whether the SEXP has the given attribute
attr : extract the attribute (might return NULL)
* src/RcppSexp.{h,cpp} : added RcppSexp(bool), RcppSexp(vector<bool>)
constructors and RcppSexp.asBool(), RcppSexp.asStdVectorBool() methods
* inst/examples/RcppInline/RcppSexpTests.r: examples/tests of the
above items
2009-12-26 Romain Francois <francoisromain@free.fr>
* src/RcppSexp.{h,cpp} : added std::set<{int,double,Rbyte,string}> as
accepted input type for the RcppSexp class (needed by RProtoBuf)
* inst/examples/RcppInline/RcppSexpTests.r: examples/tests of the above
2009-12-21 Romain Francois <francoisromain@free.fr>
* src/RcppSexp.{h,cpp} : support for raw vector added into RcppSexp
* inst/examples/RcppInline/RcppSexpTests.r: examples of raw vector
support
2009-12-20 Dirk Eddelbuettel <edd@debian.org>
* inst/examples/RcppInline/RcppInlineWithLibsExamples.r: Minor
simplifications using new RcppSexp types, added third example
2009-12-19 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.7.0
* DESCRIPTION: Descrition fields reworded and expanded to explicitly
mention 'inlining' ability as well as simple SEXP support.
* src/RcppSexp.{h,cpp}: Switch to R_PreserveObject and R_ReleaseObject
with a big thanks to Romain for the most appropriate suggestion
* src/RcppSexp.{h,cpp}: Added converters for vectors of
int, double, and std::string vectors
* src/RcppResultsSetp.{h,cpp}: Added simple single SEXP return
* src/RcppCommon.{h,cpp}: Adding simple logging facility
* inst/examples/RcppInline/RcppSexpTests.r: expanded for new types
2009-12-18 Dirk Eddelbuettel <edd@debian.org>
* R/RcppInline.R: Another improvement for Rcpp use
* inst/examples/RcppInline/RcppSimpleExamples.r: Another simple case
2009-12-17 Dirk Eddelbuettel <edd@debian.org>
* R/RcppInline.R: Improved / simplified in light of getting it to
work on Windoze too so switched to setting env var explicitly;
also split into three args for CPPFLAGS, CXXFLAGS and LIBS
* man/RcppInline.Rd: Updated accordingly to reflect new args
* inst/examples/RcppInline/RcppInlineWithLibsExamples.r: Idem
2009-12-16 Dirk Eddelbuettel <edd@debian.org>
* src/RcppSexp.{h,cpp}: Added simple RcppSexp class for simple
conversion from and to single-element SEXPs -- currently limited
to int, double, std::string
* inst/examples/RcppInline/RcppSexpTests.r: Simple tests for this
2009-12-15 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: License changed to 'GPL (>= 2)'
* COPYING: Changed from LGPL 2.1 to GPL 2 (or later)
* src/*.{h,cpp}: Relicensed under GPL 2 (or later)
2009-12-13 Dirk Eddelbuettel <edd@debian.org>
* R/RcppInline.R: Extended to for additional header and library
arguments so that we can work with arbitrary other projects
* man/RcppInline.Rd: Added documentation for these arguments
* inst/examples/RcppInline/RcppInlineWithLibsExamples.r: New
examples using GNU GSL to show how to compile + link via inline
2009-12-11 Dirk Eddelbuettel <edd@debian.org>
* R/RcppInline.R: Imported function 'cfunction' from the inline
package, along with small patch to directly support Rcpp. The
inclusion may be temporary -- if our patch is integrated into
inline we may just depend on that package
* man/RcppInline.Rd: Imported from inline, plus change for Rcpp
* inst/examples/RcppInline/RcppInlineExample.r: Small example
taken from the 'Intro to HPC with R' tutorials
* R/RcppVersion.R: Removed as unused as redundant given read.dcf() in R
* man/RcppVersion.R: idem
* NAMESPACE: updated accordingly
* INDEX: idem
2009-11-18 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Add Dominick back into Authors per his new request
reversing his requests to be removed from last December
2009-11-17 Dirk Eddelbuettel <edd@debian.org>
* man/RcppParams.Rd: applied patch by Frank S. Thomas to fix example
2009-11-15 Dirk Eddelbuettel <edd@debian.org>
* src/RcppDateVector.{cpp,h}: Moved out of Rcpp.{h,cpp}
* src/RcppDatetimeVector.{cpp,h}: idem
* src/RcppFunction.{cpp,h}: idem
* src/RcppMatrix.{cpp,h}: idem
* src/RcppMatrixView.{cpp,h}: idem
* src/RcppNumList.{cpp,h}: idem
* src/RcppResultSet.{cpp,h}: idem
* src/RcppStringVector.{cpp,h}: idem
* src/RcppStringVectorView.{cpp,h}: idem
* src/RcppVector.{cpp,h}: idem
* src/RcppVectorView.{cpp,h}: idem
* src/RcppCommon.cpp: takes remaining utility function from Rcpp.cpp
2009-11-09 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.8
* src/RcppParams.{cpp,h}: Code reorginsation, moved out of Rcpp.{h,cpp}
* src/RcppDate.{cpp,h}: idem
* src/RcppDatetime.{cpp,h}: idem
* src/RcppCommon.h: New header file for common defines and includes
* src/Makevars{,.win}: Updated and generalised to reflect new files
2009-11-08 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.7
* man/RcppVector.Rd: Remove erraneous use of \R in \title{} section
noticed by the Rd parser in R-devel (with thanks to Kurt Hornik)
2009-11-06 Dirk Eddelbuettel <edd@debian.org>
* src/RcppList.{h,cpp}: Added a simple class to accept list()
objects in order to cope with non-rectangular data-types -- this
comes from the RProtoBuf code currently only on r-forge where
we need accept lists that are potentially nested.
The API for RcppList is not fully fleshed out and needs a few
more append() member functions. Also length is currently fixed.
* cleanup: Change header file removal to Rcpp*.h
* inst/README: Added short README about history and status
* inst/doc/: Updated doxygen documentation
2009-09-29 Dirk Eddelbuettel <edd@debian.org>
* inst/examples/functionCallback/*: Added simple C++ / R example of
defining an R function that is passed to and called from C++
2009-08-03 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.6
* src/Rcpp.{h,cpp}: Added exists() method for RcppParams to test
for existence of a named parameter.
* inst/doc/: Updated doxygen documentation
2009-04-01 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.5
* COPYING: Added
2009-03-30 Dirk Eddelbuettel <edd@debian.org>
* src/Makevars: Add $(R_ARCH) to target directory path when copying
the header file as an OS X user reported not finding it with
default settings.
2009-03-01 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.4
* .Rbuildignore: Added to exclude debian/ from source tarball
2009-02-25 Dirk Eddelbuettel <edd@debian.org>
* src/Makevars.win: Renamed from Makefile.win, added missing mkdir
* cleanup: Remove a few more Windows files
2009-02-24 Dirk Eddelbuettel <edd@debian.org>
* inst/doc/{html,latex,man}: Added new documentation of the C++ classes
* doxyfile: Added Doxygen configuration file for doc generation
2009-02-22 Dirk Eddelbuettel <edd@debian.org>
* src/Rcpp.{h,cpp}: cleaner use of namespace 'std' by formal prefix
rather than via 'using namespace std'
* src/Rcpp.h: define R_NO_MAP and use Rf_* form of R API functions
2009-02-18 Dirk Eddelbuettel <edd@debian.org>
* src/Rcpp.{h,cpp}: Added a few explicit casts, and removed unused
loop variable; all to make 'g++ -Wall' happy
2009-02-10 Dirk Eddelbuettel <edd@debian.org>
* src/Rcpp.{cpp,h}: Expanded a few of the throw() messages
2009-01-09 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.3
* R/RcppLdpath.R: Also defined shorter functions CxxFlags() and
LdFlags() which cat() the longer forms RcppCxxFlags() and
RcppLdFlags() to further simplify use via litter or Rscript in
Makefile or Makevars
* man/Rcpp-package.Rd: Mention short form CxxFlags() and LdFlags()
* src/Makevars: Applied another build correction for OS X suggested
by Simon Urbanek
* src/Rcpp.{cpp,h}: Added 'view-only' classes RcppVectorView,
RcppMatrixView and RcppStringVectorView contributed by David Reiss
2008-12-02 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.2
* R/RcppLdPath.R: Correct output for the default Linux case
2008-11-30 Dirk Eddelbuettel <edd@debian.org>
* DESCRIPTION: Release 0.6.1
* src/Makevars: Added, replacing src/Makefile: thanks to Simon for a
rewrite that provides OS X support
* src/Makefile: Retired
* src/Makefile.win: Now build libRcpp.a instead of Rcpp.a
* src/Rcpp.{cpp,h}: Removed #ifdef statements related to QuantLib and
Date ops as we no longer need to split this off -- one build for all
uses; also added another date offset for the difference between the
Unix epoch of Jan 1, 1970 and what certain spreadsheets use (which is
what QuantLib) follows. With this change, Rcpp is completely
decoupled from QuantLib headers, yet can be used from QuantLib 0.2.10
or later. However, this also removes data conversion from R/Rcpp to
QL as Rcpp no longer 'knows' QL.
* R/RcppLdPath.R: Adds new functions RcppLdPath() to return lib/
directory path, and RcppLdFlags() to return arguments, including the
optional rpath settings on Linux
* R/RcppExample.R: Added new example 'RcppVectorExample()', extended
default print method for examples
* man/Rcpp-package.Rd: Expanded / updated documentation of package
use when building other packages
* cleanup: Removing static libraries too but do not remove src/Makevars
2008-11-05 Dirk Eddelbuettel <edd@debian.org>
* Release 0.6.0
* New maintainer
* src/Makefile{,.win}: New files, including functionality from both
configure and RcppSrc/Makefile; we now build two libraries, one for
use by the package which also runs the example, and one for users to
link against
* src/Makevars.in: Removed
* src/Rcpp.{cpp,h}: moved in from ../RcppSrc
* src/Rcpp.{cpp,h}: Add new type RcppDatetime corresponding to
POSIXct in with full support for microsecond time resolution
between R and C++
* man/*: Several new manual pages added
* configure{,.in,.win}: Removed as src/Makefile* can handle this more
easily
* DESCRIPTION: Minor cleanup and reformatting, Date: now uses
svn:keyword Date property
* NAMESPACE: Renamed RcppTemplateVersion to RcppVersion,
deleted RcppDemo
* demo/ directory removed as vignette("RcppAPI") is easier and more
reliable to show vignette documentation
* R/zzz.R: RcppTemplateDemo() removed, vignette("RcppAPI") is easier
* man/RcppTemplateDemo.Rd removed as well
* R/RcppExample.R: reindented, rewritten to set default arguments
* R/RcppTemplateVersion.R: renamed to RcppVersion.R
* man/RcppTemplateVersion.Rd: renamed to RcppVersion.Rd
* RcppSrc/Rcpp.{cpp,h}: moved to src/ directory
* RcppSrc/Makefile{,.win}: removed
* inst/doc/RcppAPI.{Rnw,pdf}: Added footnote onto titlepage about how
this document has not (yet) been updated along with the channges made
