https://github.com/cran/agricolae
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Tip revision: 8e18d15ec14d76bf12f7050ab1309a5972f889c5 authored by Felipe de Mendiburu on 20 April 2009, 00:00:00 UTC
version 1.0-7
Tip revision: 8e18d15
hcut.Rd
\name{hcut}
\alias{hcut}
%- Also NEED an '\alias' for EACH other topic documented here.
\title{ Cut tree of consensus }

\description{
  It shows dendrogram of a consensus of a tree generated by hclust.
}
\usage{
hcut(consensus,h,group,col.text="blue",cex.text=1,...)
}
\arguments{
  \item{consensus}{ object consensus }
  \item{h}{ numeric scalar or vector with heights where the tree should be cut. }
  \item{group}{ an integer scalar with the desired number of group }
  \item{col.text}{ color of number consensus }
  \item{cex.text}{ size of number consensus }
  \item{\dots}{ Other parameters of the function plot() in cut() } 
}
\value{
  hcut returns a data.frame with group memberships and consensus tree.
}
\author{ F. de Mendiburu }

\seealso{\code{\link{hclust}}, \code{\link{consensus}}, \code{\link{hgroups}} }

\examples{
library(agricolae)
data(pamCIP)
# only code
rownames(pamCIP)<-substr(rownames(pamCIP),1,6)
# groups of clusters
output<-consensus(pamCIP,nboot=100)
hcut(output,h=0.4,group=5,main="Group 5")
# 
hcut(output,h=0.4,group=8,type="t",edgePar = list(lty=1:2, col=2:1),main="group 8"
,col.text="blue",cex.text=1)
}

\keyword{ cluster }
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