https://github.com/cran/gap
Raw File
Tip revision: 80331ed4acf40832833f9fdfac75ed506b35858f authored by Jing Hua Zhao on 08 June 2018, 15:57:56 UTC
version 1.1-22
Tip revision: 80331ed
MD5
9f4a086caa4251a153817a1427e37209 *ChangeLog
5a3ebc00f5f05ef1da5b0bec078aa3bd *DESCRIPTION
a3b2a7c9a735012be9513700d8aaff35 *INDEX
ed4d732eb8b6ffd9fe0304e88fad01aa *NAMESPACE
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a648b1b8db9a19707ffc40e3a70c19f9 *vignettes/results/kinship_1.txt
ead0a11b873657d40db849e400884074 *vignettes/results/kinship_2.txt
41b2e740badc562a72587a903909764c *vignettes/rnews.Rnw
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