https://github.com/cran/ape
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Tip revision: 397c0d84573dedf9fdca94039718a7664182e2af authored by Emmanuel Paradis on 12 August 2003, 00:00:00 UTC
version 1.1-3
Tip revision: 397c0d8
opsin.Rd
\name{opsin}
\alias{opsin}
\alias{opsin.newick}

\title{Gene Tree of 32 opsin Sequences}

\description{
  This data set describes a gene tree estimated from 32 opsin
  sequences. 
}

\usage{
data(opsin.newick)
}

\format{
  \code{opsin.newick} is a string with the tree in Newick format.
}

\source{
  This tree is described in Misawa and Tajima (2000) as an example
  for application of the Klastorin (1982) classification method.
}

\seealso{
\code{\link{klastorin}}.
}

\references{
  Misawa, K. (2000) A simple method for classifying genes and a bootstrap
  test for classifications. \emph{Molecular
    Biology and Evolution}, \bold{17}, 1879--1884.
}

\examples{
library(ape)

# example tree in NH format (a string)
data("opsin.newick") 
opsin.newick

# get corresponding phylo object
tree.opsin <- read.tree(text = opsin.newick)

# plot tree
plot(tree.opsin, label.offset = 0.01)
}
\keyword{datasets}

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