https://github.com/cran/ape
Tip revision: 397c0d84573dedf9fdca94039718a7664182e2af authored by Emmanuel Paradis on 12 August 2003, 00:00:00 UTC
version 1.1-3
version 1.1-3
Tip revision: 397c0d8
opsin.Rd
\name{opsin}
\alias{opsin}
\alias{opsin.newick}
\title{Gene Tree of 32 opsin Sequences}
\description{
This data set describes a gene tree estimated from 32 opsin
sequences.
}
\usage{
data(opsin.newick)
}
\format{
\code{opsin.newick} is a string with the tree in Newick format.
}
\source{
This tree is described in Misawa and Tajima (2000) as an example
for application of the Klastorin (1982) classification method.
}
\seealso{
\code{\link{klastorin}}.
}
\references{
Misawa, K. (2000) A simple method for classifying genes and a bootstrap
test for classifications. \emph{Molecular
Biology and Evolution}, \bold{17}, 1879--1884.
}
\examples{
library(ape)
# example tree in NH format (a string)
data("opsin.newick")
opsin.newick
# get corresponding phylo object
tree.opsin <- read.tree(text = opsin.newick)
# plot tree
plot(tree.opsin, label.offset = 0.01)
}
\keyword{datasets}