https://github.com/cran/spatstat
Tip revision: faf8864bb7a1236c2b27fd63c8abb76be20e9386 authored by Adrian Baddeley on 19 October 2006, 22:36:34 UTC
version 1.10-1
version 1.10-1
Tip revision: faf8864
nncorr.R
#
# nncorr.R
#
# $Revision: 1.3 $ $Date: 2006/10/10 04:22:48 $
#
nncorr <- function(X, f = function(m1,m2) { m1 * m2}, ...,
use = "all.obs",
method = c("pearson", "kendall", "spearman")) {
verifyclass(X, "ppp")
if(!is.marked(X))
stop("X does not have marks")
if(missing(method) || is.null(method))
method <- "pearson"
f.is.default <- missing(f)
stopifnot(is.function(f))
# denominator
m <- marks(X, dfok=FALSE)
Efmm <- mean(outer(m, m, f, ...))
# border method
nn <- nnwhich(X)
ok <- (nndist(X) <= bdist.points(X))
if(!any(ok))
stop("Insufficient data")
Y <- X[nn[ok]]
X <- X[ok]
Efmk <- mean(f(marks(X), marks(Y), ...))
#
answer <- c(unnormalised=Efmk,
normalised=Efmk/Efmm)
if(!is.multitype(X) && f.is.default) {
classic <- cor(marks(X), marks(Y), use=use, method=method)
answer <- c(answer, correlation=classic)
}
return(answer)
}