https://github.com/cran/spatstat
Tip revision: c1656923b336739af0a11fb0f0d0655eb338242f authored by Adrian Baddeley on 19 May 2007, 00:13:37 UTC
version 1.11-6
version 1.11-6
Tip revision: c165692
distances.c
/*
distances.c
Distances between points
$Revision: 1.19 $ $Date: 2007/04/05 08:41:43 $
*/
#include <math.h>
/* #include <stdio.h> */
double sqrt();
void pairdist(n, x, y, d)
int *n;
double *x, *y, *d;
{
int i, j, npoints;
double *dp;
double xi, yi, dx, dy, dist;
npoints = *n;
/* set d[0,0] = 0 */
*d = 0.0;
for (i=1; i < npoints; i++)
{
xi = x[i];
yi = y[i];
/* point at the start of column i */
dp = d + i * npoints;
/* set diagonal to zero */
dp[i] = 0.0;
for (j=0; j < i; j++)
{
dx = x[j] - xi;
dy = y[j] - yi;
dist = sqrt( dx * dx + dy * dy );
/* upper triangle */
*dp = dist;
++dp;
/* lower triangle */
d[ j * npoints + i] = dist;
}
}
}
/* squared distances */
void pair2dist(n, x, y, d)
int *n;
double *x, *y, *d;
{
int i, j, npoints;
double *dp;
double xi, yi, dx, dy, dist;
npoints = *n;
/* set d[0,0] = 0 */
*d = 0.0;
for (i=1; i < npoints; i++)
{
xi = x[i];
yi = y[i];
/* point at the start of column i */
dp = d + i * npoints;
/* set diagonal to zero */
dp[i] = 0.0;
for (j=0; j < i; j++)
{
dx = x[j] - xi;
dy = y[j] - yi;
dist = dx * dx + dy * dy;
/* upper triangle */
*dp = dist;
++dp;
/* lower triangle */
d[ j * npoints + i] = dist;
}
}
}
void crossdist(nfrom, xfrom, yfrom, nto, xto, yto, d)
int *nto, *nfrom;
double *xfrom, *yfrom, *xto, *yto, *d;
{
int i, j, nf, nt;
double *dptr;
double xj, yj, dx, dy;
nf = *nfrom;
nt = *nto;
dptr = d;
for (j=0; j < nt; j++) {
xj = xto[j];
yj = yto[j];
for(i = 0; i < nf; i++, dptr++) {
dx = xj - xfrom[i];
dy = yj - yfrom[i];
*dptr = sqrt( dx * dx + dy * dy );
}
}
}
/* squared distances */
void cross2dist(nfrom, xfrom, yfrom, nto, xto, yto, d)
int *nto, *nfrom;
double *xfrom, *yfrom, *xto, *yto, *d;
{
int i, j, nf, nt;
double *dptr;
double xj, yj, dx, dy;
nf = *nfrom;
nt = *nto;
dptr = d;
for (j=0; j < nt; j++) {
xj = xto[j];
yj = yto[j];
for(i = 0; i < nf; i++, dptr++) {
dx = xj - xfrom[i];
dy = yj - yfrom[i];
*dptr = dx * dx + dy * dy;
}
}
}
/* distances with periodic correction */
void pairPdist(n, x, y, xwidth, yheight, d)
int *n;
double *x, *y, *xwidth, *yheight, *d;
{
int i, j, npoints;
double *dp;
double xi, yi, dx, dy, dx2, dy2, dx2p, dy2p, dist, wide, high;
npoints = *n;
wide = *xwidth;
high = *yheight;
/* set d[0,0] = 0 */
*d = 0.0;
for (i=1; i < npoints; i++)
{
xi = x[i];
yi = y[i];
/* point at the start of column i */
dp = d + i * npoints;
/* set diagonal to zero */
dp[i] = 0.0;
for (j=0; j < i; j++)
{
dx = x[j] - xi;
dy = y[j] - yi;
dx2p = dx * dx;
dy2p = dy * dy;
dx2 = (dx - wide) * (dx - wide);
dy2 = (dy - wide) * (dy - wide);
if(dx2 < dx2p) dx2p = dx2;
if(dy2 < dy2p) dy2p = dy2;
dx2 = (dx + wide) * (dx + wide);
dy2 = (dy + wide) * (dy + wide);
if(dx2 < dx2p) dx2p = dx2;
if(dy2 < dy2p) dy2p = dy2;
dist = sqrt( dx2p + dy2p );
/* upper triangle */
*dp = dist;
++dp;
/* lower triangle */
d[ j * npoints + i] = dist;
}
}
}
/* same function without the sqrt */
void pairP2dist(n, x, y, xwidth, yheight, d)
int *n;
double *x, *y, *xwidth, *yheight, *d;
{
int i, j, npoints;
double *dp;
double xi, yi, dx, dy, dx2, dy2, dx2p, dy2p, dist, wide, high;
npoints = *n;
wide = *xwidth;
high = *yheight;
/* set d[0,0] = 0 */
*d = 0.0;
for (i=1; i < npoints; i++)
{
xi = x[i];
yi = y[i];
/* point at the start of column i */
dp = d + i * npoints;
/* set diagonal to zero */
dp[i] = 0.0;
for (j=0; j < i; j++)
{
dx = x[j] - xi;
dy = y[j] - yi;
dx2p = dx * dx;
dy2p = dy * dy;
dx2 = (dx - wide) * (dx - wide);
dy2 = (dy - wide) * (dy - wide);
if(dx2 < dx2p) dx2p = dx2;
if(dy2 < dy2p) dy2p = dy2;
dx2 = (dx + wide) * (dx + wide);
dy2 = (dy + wide) * (dy + wide);
if(dx2 < dx2p) dx2p = dx2;
if(dy2 < dy2p) dy2p = dy2;
dist = dx2p + dy2p;
/* upper triangle */
*dp = dist;
++dp;
/* lower triangle */
d[ j * npoints + i] = dist;
}
}
}
void crossPdist(nfrom, xfrom, yfrom, nto, xto, yto, xwidth, yheight, d)
int *nto, *nfrom;
double *xfrom, *yfrom, *xto, *yto, *xwidth, *yheight, *d;
{
int i, j, nf, nt;
double *dptr;
double xj, yj, dx, dy, dx2, dy2, dx2p, dy2p, wide, high;
nf = *nfrom;
nt = *nto;
wide = *xwidth;
high = *yheight;
dptr = d;
for (j=0; j < nt; j++) {
xj = xto[j];
yj = yto[j];
for(i = 0; i < nf; i++, dptr++) {
dx = xj - xfrom[i];
dy = yj - yfrom[i];
dx2p = dx * dx;
dy2p = dy * dy;
dx2 = (dx - wide) * (dx - wide);
dy2 = (dy - wide) * (dy - wide);
if(dx2 < dx2p) dx2p = dx2;
if(dy2 < dy2p) dy2p = dy2;
dx2 = (dx + wide) * (dx + wide);
dy2 = (dy + wide) * (dy + wide);
if(dx2 < dx2p) dx2p = dx2;
if(dy2 < dy2p) dy2p = dy2;
*dptr = sqrt( dx2p + dy2p );
}
}
}
/* THE FOLLOWING CODE ASSUMES THAT y IS SORTED IN ASCENDING ORDER */
void nndistsort(n, x, y, nnd, huge)
int *n;
double *x, *y, *nnd, *huge;
{
int npoints, i, left, right;
double d, dmin, d2, d2min, xi, yi, dx, dy, hu, hu2;
#ifdef SPATSTAT_DEBUG
FILE *out;
#endif
hu = *huge;
hu2 = hu * hu;
#ifdef SPATSTAT_DEBUG
out = fopen("out", "w");
#endif
npoints = *n;
for(i = 0; i < npoints; i++) {
#ifdef SPATSTAT_DEBUG
fprintf(out, "\ni=%d\n", i);
#endif
dmin = hu;
d2min = hu2;
xi = x[i];
yi = y[i];
/* search backward */
for(left = i - 1;
left >= 0 && (dy = (yi - y[left])) < dmin ;
--left)
{
#ifdef SPATSTAT_DEBUG
fprintf(out, "L");
#endif
dx = x[left] - xi;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
}
}
/* search forward */
for(right = i + 1;
right < npoints && (dy = (y[right] - yi)) < dmin ;
++right)
{
#ifdef SPATSTAT_DEBUG
fprintf(out, "R");
#endif
dx = x[right] - xi;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
}
}
#ifdef SPATSTAT_DEBUG
fprintf(out, "\n");
#endif
nnd[i] = dmin;
}
#ifdef SPATSTAT_DEBUG
fclose(out);
#endif
}
/* nnwhichsort: same as nndistsort,
but also returns id of nearest neighbour
*/
void nnwhichsort(n, x, y, nnd, nnwhich, huge)
int *n, *nnwhich;
double *x, *y, *nnd, *huge;
{
int npoints, i, left, right, which;
double d, dmin, d2, d2min, xi, yi, dx, dy, hu, hu2;
hu = *huge;
hu2 = hu * hu;
npoints = *n;
for(i = 0; i < npoints; i++) {
dmin = hu;
d2min = hu2;
which = -1;
xi = x[i];
yi = y[i];
/* search backward */
if(i > 0){
for(left = i - 1;
left >= 0 && (dy = (yi - y[left])) < dmin ;
--left)
{
dx = x[left] - xi;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
which = left;
}
}
}
/* search forward */
if(i < npoints - 1) {
for(right = i + 1;
right < npoints && (dy = (y[right] - yi)) < dmin ;
++right)
{
dx = x[right] - xi;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
which = right;
}
}
}
nnd[i] = dmin;
nnwhich[i] = which;
}
}
/*
nnXwhich: for TWO point patterns X and Y,
find the nearest neighbour
(from each point of X to the nearest point of Y)
returning both the distance and the identifier
Requires both patterns to be sorted in order of increasing y coord
*/
void nnXwhich(n1, x1, y1, n2, x2, y2, nnd, nnwhich, huge)
int *n1, *n2, *nnwhich;
double *x1, *y1, *x2, *y2, *nnd, *huge;
{
int npoints1, npoints2, i, jleft, jright, jwhich, lastjwhich;
double d, dmin, d2, d2min, x1i, y1i, dx, dy, hu, hu2;
hu = *huge;
hu2 = hu * hu;
npoints1 = *n1;
npoints2 = *n2;
if(npoints1 == 0 || npoints2 == 0)
return;
lastjwhich = 0;
for(i = 0; i < npoints1; i++) {
dmin = hu;
d2min = hu2;
jwhich = -1;
x1i = x1[i];
y1i = y1[i];
/* search backward from previous nearest neighbour */
if(lastjwhich > 0) {
for(jleft = lastjwhich - 1;
jleft >= 0 && (dy = (y1i - y2[jleft])) < dmin ;
--jleft)
{
dx = x2[jleft] - x1i;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
jwhich = jleft;
}
}
}
/* search forward from previous nearest neighbour */
if(lastjwhich < npoints2) {
for(jright = lastjwhich;
jright < npoints2 && (dy = (y2[jright] - y1i)) < dmin ;
++jright)
{
dx = x2[jright] - x1i;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
jwhich = jright;
}
}
}
nnd[i] = dmin;
nnwhich[i] = jwhich;
lastjwhich = jwhich;
}
}
/*
nnXexclude: similar to nnXwhich
but allows X and Y to include common points
(which are not to be counted as neighbours)
Code numbers id1, id2 are attached to the patterns X and Y respectively,
such that
x1[i], y1[i] and x2[j], y2[j] are the same point iff id1[i] = id2[j].
Requires both patterns to be sorted in order of increasing y coord
*/
void nnXexclude(n1, x1, y1, id1, n2, x2, y2, id2, nnd, nnwhich, huge)
int *n1, *n2, *nnwhich, *id1, *id2;
double *x1, *y1, *x2, *y2, *nnd, *huge;
{
int npoints1, npoints2, i, jleft, jright, jwhich, lastjwhich, id1i;
double d, dmin, d2, d2min, x1i, y1i, dx, dy, hu, hu2;
hu = *huge;
hu2 = hu * hu;
npoints1 = *n1;
npoints2 = *n2;
if(npoints1 == 0 || npoints2 == 0)
return;
lastjwhich = 0;
for(i = 0; i < npoints1; i++) {
dmin = hu;
d2min = hu2;
jwhich = -1;
x1i = x1[i];
y1i = y1[i];
id1i = id1[i];
/* search backward from previous nearest neighbour */
if(lastjwhich > 0) {
for(jleft = lastjwhich - 1;
jleft >= 0 && (dy = (y1i - y2[jleft])) < dmin ;
--jleft)
{
/* do not compare identical points */
if(id2[jleft] != id1i) {
dx = x2[jleft] - x1i;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
jwhich = jleft;
}
}
}
}
/* search forward from previous nearest neighbour */
if(lastjwhich < npoints2) {
for(jright = lastjwhich;
jright < npoints2 && (dy = (y2[jright] - y1i)) < dmin ;
++jright)
{
if(id2[jright] != id1i) {
dx = x2[jright] - x1i;
d2 = dx * dx + dy * dy;
if (d2 < d2min) {
d2min = d2;
dmin = sqrt(d2);
jwhich = jright;
}
}
}
}
nnd[i] = dmin;
nnwhich[i] = jwhich;
lastjwhich = jwhich;
}
}