https://github.com/cran/Cyclops
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Tip revision: d7f62b6a9ea48bc0de4d4cbf56b126d1d8b33f4e authored by Marc A. Suchard on 06 October 2016, 19:15:26 UTC
version 1.2.2
Tip revision: d7f62b6
MD5
28aea42135e66d6605fee9bf82d43373 *DESCRIPTION
de85860396ac3149e1536e9aa4cf1e47 *NAMESPACE
a6d629591d3ba77db967f0e1239dd441 *NEWS
8bef8da196b8e8595c8313c2800bf297 *R/Abridge.R
5f7a88c777ac1e47d7680d4e7f428e63 *R/DataManagement.R
45e49125b00bc49afd7718abe2a6acaa *R/ExampleData.R
df3a46173a19c793f16e278d695ae39e *R/LegacyDataConversion.R
88151948d7232ad85417828404eb329e *R/ModelFit.R
60ca5cb8e92f940d36463587bb35a127 *R/Multitype.R
8d0b05f421481e98c80b165ce3170223 *R/NewDataConversion.R
a777bc2f6acf26d8250ba3479df884d4 *R/PackageMaintenance.R
77785374dad86421e261566724358740 *R/Predict.R
1d2a953503a41f83fc470f7ae5bc274c *R/RcppExports.R
f6a6d1d23eea398e450c63fd785dcfba *R/Simulation.R
3071226bc6ad82cd8d29254fcec15502 *R/cyclops.R
22a6eb3ed721209e7a17dea94d57f0b4 *README.md
97359edf34b53a80b1b890aee97bb88a *data/oxford.rda
486ad7931a4cb183f491056c91677af9 *inst/CITATION
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5cbd50f402767b03636340e8b95fae89 *man/getNumberOfCovariates.Rd
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