https://github.com/cran/spatstat
Tip revision: c4d891207f5558a3e41d4d064fdb877e7eb96a6a authored by Adrian Baddeley on 31 December 2014, 10:17:05 UTC
version 1.40-0
version 1.40-0
Tip revision: c4d8912
split.ppp.R
#
# split.ppp.R
#
# $Revision: 1.24 $ $Date: 2014/10/24 00:22:30 $
#
# split.ppp and "split<-.ppp"
#
#########################################
split.ppp <- function(x, f = marks(x), drop=FALSE, un=NULL, ...) {
verifyclass(x, "ppp")
mf <- markformat(x)
if(is.null(un))
un <- missing(f) && (mf != "dataframe")
if(missing(f)) {
# f defaults to marks of x
switch(mf,
none={
stop("f is missing and there are no marks")
},
vector={
if(!is.multitype(x))
stop("f is missing and the pattern is not multitype")
f <- fsplit <- marks(x)
},
dataframe={
f <- fsplit <- firstfactor(marks(x))
if(is.null(f))
stop("Data frame of marks contains no factors")
})
splittype <- "factor"
} else{
# f was given
fsplit <- f
if(is.factor(f)) {
splittype <- "factor"
} else if(is.tess(f)) {
# f is a tessellation: determine the grouping
f <- marks(cut(x, fsplit))
splittype <- "tess"
} else if(is.owin(f)) {
# f is a window: coerce to a tessellation
W <- as.owin(x)
fsplit <- tess(tiles=list(fsplit, setminus.owin(W, fsplit)),
window=W)
f <- marks(cut(x, fsplit))
splittype <- "tess"
} else if(is.im(f)) {
# f is an image: coerce to a tessellation
fsplit <- tess(image=f)
f <- marks(cut(x, fsplit))
splittype <- "tess"
} else if(is.character(f) && length(f) == 1) {
# f is the name of a column of marks
marx <- marks(x)
if(is.data.frame(marx) && (f %in% names(marx)))
fsplit <- f <- marx[[f]]
else
stop(paste("The name", sQuote(f), "does not match any column of marks"))
splittype <- "factor"
} else
stop(paste("f must be",
"a factor, a tessellation, an image,",
"or the name of a column of marks"))
if(length(f) != npoints(x))
stop("length(f) must equal the number of points in x")
}
# At this point
# 'f' is a factor that can be used to separate the points
# 'fsplit' is the object (either a factor or a tessellation)
# that determines the split (and can be "un-split")
lev <- levels(f)
if(drop) {
# remove components that don't contain points
retain <- (table(f) > 0)
lev <- lev[retain]
switch(splittype,
tess = {
# remove tiles that don't contain points
fsplit <- fsplit[retain]
},
factor = {
# delete levels that don't occur
fsplit <- factor(fsplit, levels=lev)
},
stop("Internal error: wrong format for fsplit"))
}
# split the data
out <- list()
for(l in lev)
out[[paste(l)]] <- x[!is.na(f) & (f == l)]
if(un)
out <- lapply(out, unmark)
if(splittype == "tess") {
til <- tiles(fsplit)
for(i in seq_along(out))
out[[i]]$window <- til[[i]]
}
class(out) <- c("splitppp", class(out))
attr(out, "fsplit") <- fsplit
return(out)
}
"split<-.ppp" <- function(x, f=marks(x), drop=FALSE, un=missing(f),
..., value) {
verifyclass(x, "ppp")
W <- x$window
mf <- markformat(x)
# evaluate `un' before assigning value of 'f'
force(un)
# validate assignment value
stopifnot(is.list(value))
if(!all(unlist(lapply(value, is.ppp))))
stop(paste("Each entry of", sQuote("value"),
"must be a point pattern"))
ismark <- unlist(lapply(value, is.marked))
if(any(ismark) && !all(ismark))
stop(paste("Some entries of",
sQuote("value"),
"are marked, and others are unmarked"))
vmarked <- all(ismark)
# determine type of splitting
if(missing(f)) {
# f defaults to marks of x
switch(mf,
none={
stop("f is missing and there are no marks")
},
vector={
if(!is.multitype(x))
stop("f is missing and the pattern is not multitype")
f <- fsplit <- marks(x)
},
dataframe={
f <- fsplit <- firstfactor(marks(x))
if(is.null(f))
stop("Data frame of marks contains no factors")
})
} else {
# f given
fsplit <- f
if(is.tess(f)) {
# f is a tessellation: determine the grouping
f <- marks(cut(x, fsplit))
} else if(is.im(f)) {
# f is an image: determine the grouping
fsplit <- tess(image=f)
f <- marks(cut(x, fsplit))
} else if(is.character(f) && length(f) == 1) {
# f is the name of a column of marks
marx <- marks(x)
if(is.data.frame(marx) && (f %in% names(marx)))
fsplit <- f <- marx[[f]]
else
stop(paste("The name", sQuote(f), "does not match any column of marks"))
} else if(!is.factor(f))
stop(paste("f must be",
"a factor, a tessellation, an image,",
"or the name of a column of marks"))
if(length(f) != x$n)
stop("length(f) must equal the number of points in x")
}
#
all.levels <- lev <- levels(f)
if(!drop)
levtype <- "levels of f"
else {
levtype <- "levels which f actually takes"
# remove components that don't contain points
lev <- lev[table(f) > 0]
}
if(length(value) != length(lev))
stop(paste("length of", sQuote("value"),
"should equal the number of",
levtype))
# ensure value[[i]] is associated with lev[i]
if(!is.null(names(value))) {
if(!all(names(value) %in% as.character(lev)))
stop(paste("names of", sQuote("value"), "should be levels of f"))
value <- value[lev]
}
names(value) <- NULL
# restore the marks, if they were discarded
if(un && is.marked(x)) {
if(vmarked)
warning(paste(sQuote("value"), "contains marked point patterns:",
"this is inconsistent with un=TRUE; marks ignored."))
for(i in seq_along(value))
value[[i]] <- value[[i]] %mark% factor(lev[i], levels=all.levels)
}
# handle NA's in splitting factor
if(any(isNA <- is.na(f))) {
xNA <- x[isNA]
if(un && is.marked(x))
xNA <- xNA %mark% factor(NA, levels=all.levels)
value <- append(value, list(xNA))
}
# put Humpty together again
out <- do.call(superimpose,c(value,list(W=W)))
return(out)
}
print.splitppp <- function(x, ...) {
f <- attr(x, "fsplit")
what <- if(is.tess(f)) "tessellation" else
if(is.factor(f)) "factor" else "unknown data"
cat(paste("Point pattern split by", what, "\n"))
nam <- names(x)
for(i in seq_along(x)) {
cat(paste("\n", nam[i], ":\n", sep=""))
print(x[[i]])
}
return(invisible(NULL))
}
summary.splitppp <- function(object, ...) {
x <- lapply(object, summary, ...)
class(x) <- "summary.splitppp"
x
}
print.summary.splitppp <- function(x, ...) {
class(x) <- "listof"
print(x)
invisible(NULL)
}
"[.splitppp" <- function(x, ...) {
f <- attr(x, "fsplit")
# invoke list method on x
class(x) <- "list"
y <- x[...]
# then make it a 'splitppp' object too
class(y) <- c("splitppp", class(y))
if(is.tess(f)) {
fsplit <- f[...]
} else if(is.factor(f)) {
lev <- levels(f)
sublev <- lev[...]
subf <- f[f %in% sublev]
fsplit <- factor(subf, levels=lev)
} else stop("Unknown splitting type")
attr(y, "fsplit") <- fsplit
y
}
"[<-.splitppp" <- function(x, ..., value) {
if(!all(unlist(lapply(value, is.ppp))))
stop("replacement value must be a list of point patterns")
f <- attr(x, "fsplit")
# invoke list method
class(x) <- "list"
x[...] <- value
# then make it a 'splitppp' object too
class(x) <- c("splitppp", class(x))
if(is.tess(f)) {
fsplit <- f
} else if(is.factor(f)) {
lev <- levels(f)
fsplit <- factor(rep.int(lev, unlist(lapply(x, npoints))), levels=lev)
}
attr(x, "fsplit") <- fsplit
x
}
density.splitppp <- function(x, ...) {
as.listof(lapply(x, density, ...))
}
plot.splitppp <- function(x, ..., main) {
if(missing(main)) main <- short.deparse(substitute(x))
do.call("plot.listof",
resolve.defaults(list(x=x, main=main),
list(...),
list(equal.scales=TRUE)))
}
as.layered.splitppp <- function(X) { do.call("layered", X) }