https://github.com/cran/epiR
Raw File
Tip revision: b022f3bdd81457e09a57eb7b2f2c5cf7fdb93822 authored by Mark Stevenson on 16 February 2022, 23:20:06 UTC
version 2.0.43
Tip revision: b022f3b
NAMESPACE
# Export all names. Internal (undocumented functions are not included)

export(epi.2by2)
export(epi.about)
export(epi.asc)
export(epi.betabuster)
export(epi.blcm.paras)
export(epi.bohning)     
export(epi.ccc)
export(epi.conf)
export(epi.convgrid)
export(epi.cp)
export(epi.cpresids)
export(epi.descriptives)
export(epi.dgamma)
export(epi.directadj)
export(epi.dms)         
export(epi.dsl)
export(epi.edr)
export(epi.empbayes)
export(epi.herdtest)
export(epi.indirectadj)
export(epi.insthaz)
export(epi.interaction)
export(epi.iv)          
export(epi.kappa)
export(epi.ltd)
export(epi.mh)
export(epi.nomogram)    
export(epi.occc)
export(epi.offset)
export(epi.pooled)      
export(epi.popsize)
export(epi.prcc)
export(epi.prev)
export(epi.psi)
export(epi.RtoBUGS)     
export(epi.smd)
export(epi.smr)
export(epi.sscc)
export(epi.ssclus1estb) 
export(epi.ssclus1estc)
export(epi.ssclus2estb)
export(epi.ssclus2estc)
export(epi.sscohortc)
export(epi.sscohortt)   
export(epi.sscompb)
export(epi.sscompc)
export(epi.sscomps)
export(epi.ssdetect)
export(epi.ssdxsesp)
export(epi.ssequb)      
export(epi.ssequc)
export(epi.ssninfb)
export(epi.ssninfc)
export(epi.sssimpleestb)
export(epi.sssimpleestc)
export(epi.ssstrataestb)
export(epi.ssstrataestc)
export(epi.sssupb)
export(epi.sssupc)
export(epi.ssxsectn)
export(epi.ssdxtest)  
export(epi.tests) 


# ------------------------------------------------------------------------------------
# Representative sampling - sample size probability of disease freedom:
export(rsu.sspfree.rs)

# Representative sampling - sample size surveillance system sensitivity:
export(rsu.sssep.rs)
export(rsu.sssep.rs2st)
export(rsu.sssep.rsfreecalc)
export(rsu.sssep.rspool)

# Representative sampling - calculate surveillance system sensitivity:
export(rsu.sep.rs)
export(rsu.sep.rs2st)
export(rsu.sep.rsmult)
export(rsu.sep.rsfreecalc)
export(rsu.sep.rspool)
export(rsu.sep.rsvarse)

# Representative sampling - calculate surveillance system specificity:
export(rsu.spp.rs)

# Representative sampling - probability of disease freedom:
export(rsu.pfree.rs)
export(rsu.pfree.equ)


# ------------------------------------------------------------------------------------
# Risk-based sampling - sample size surveillance system sensitivity:
export(rsu.sssep.rbsrg)
export(rsu.sssep.rbmrg)
export(rsu.sssep.rb2st1rf)
export(rsu.sssep.rb2st2rf)

# Risk-based sampling - calculate surveillance system sensitivity:
export(rsu.sep.rb)
export(rsu.sep.rb1rf)
export(rsu.sep.rb2rf)
export(rsu.sep.rbvarse)
export(rsu.sep.rb2st)

# Census:
export(rsu.sep.cens)

# Passive:
export(rsu.sep.pass)

# Miscellaneous functions:
export(rsu.adjrisk)
export(rsu.dxtest)
export(rsu.epinf)
export(rsu.pstar)
export(rsu.sep)


S3method(print, epi.2by2)
S3method(summary, epi.2by2)
S3method(print, epi.tests)
S3method(summary, epi.tests)
S3method(print, epi.occc)
S3method(summary, epi.occc)

# Import all packages listed as Imports or Depends
import(survival)
import(pander)
import(sf)
import(lubridate)
importFrom(BiasedUrn, dFNCHypergeo)
importFrom("graphics", "hist")
importFrom("methods", "slot")
importFrom("stats", "xtabs", "anova", "aov", "addmargins", "complete.cases", "confint", "chisq.test", "cor", "cov", "fisher.test", "mantelhaen.test", "model.matrix", "pbeta", "pbinom", "pchisq", "phyper", "pnorm", "pt", "qbeta", "qbinom", "qchisq", "qf", "qgamma", "qnorm", "qpois", "qt", "quantile", "rpois", "sd", "uniroot", "var", "vcov", "confint.default")
importFrom("zoo", "rollmean")
importFrom("utils", "packageDescription", "write.table")
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