Package: ape
Version: 2.2-3
Date: 2009-01-12
Title: Analyses of Phylogenetics and Evolution
Author: Emmanuel Paradis, Ben Bolker, Julien Claude, Hoa Sien Cuong,
  Richard Desper, Benoit Durand, Julien Dutheil, Olivier Gascuel,
  Gangolf Jobb, Christoph Heibl, Vincent Lefort, Jim Lemon,
  Yvonnick Noel, Johan Nylander, Rainer Opgen-Rhein, Korbinian Strimmer,
  Damien de Vienne
Maintainer: Emmanuel Paradis <Emmanuel.Paradis@ird.fr>
Depends: R (>= 2.6.0)
Suggests: gee
Imports: gee, nlme, lattice
ZipData: no
Description: ape provides functions for reading, writing, plotting,
  and manipulating phylogenetic trees, analyses of comparative data
  in a phylogenetic framework, analyses of diversification and
  macroevolution, computing distances from allelic and nucleotide
  data, reading nucleotide sequences, and several tools such as
  Mantel's test, computation of minimum spanning tree, the population
  parameter theta based on various approaches, nucleotide diversity,
  generalized skyline plots, estimation of absolute evolutionary rates
  and clock-like trees using mean path lengths, non-parametric rate
  smoothing and penalized likelihood, classifying genes in trees using
  the Klastorin-Misawa-Tajima approach. Phylogeny estimation can be done
  with the NJ, BIONJ, and ME methods.
License: GPL (>= 2)
URL: http://ape.mpl.ird.fr/
Packaged: Tue Jan 13 10:04:19 2009; paradis