https://github.com/cran/ade4
Tip revision: 5c03b2f70b8daad27cdea2253918d1ed39eb6b03 authored by Simon Penel on 19 August 2009, 00:00:00 UTC
version 1.4-16
version 1.4-16
Tip revision: 5c03b2f
ChangeLog
2010-08-18 15:10 sdray
* DESCRIPTION: ---------- release of ade4 1.4-16 ----------
2010-05-08 05:41 thioulouse
* data/meaudret.rda: Updated meaudret environmental dataframe names
2010-05-06 16:16 sdray
* man/triangle.class.Rd: Remove auto-generated content in the
documentation
2010-04-29 14:49 sdray
* R/s.class.R: argument 'pch' is now recycled so that one symbol
could be assigned to each point. Thanks to Vincent Le Garrec for
his question.
2010-04-12 08:10 sdray
* man/dist.binary.Rd: Correct some bibliographic references. Thanks
to Pierre Legendre.
2010-03-19 13:19 sdray
* R/dist.ktab.R: Correct a small bug in the ldist.ktab function
2010-03-10 09:13 thioulouse
* man/ktab.match2ktabs.Rd: removed deprecated email address in
ktab.match2ktabs documentation file
2010-03-05 15:06 jombart
* R/scalewt.R: Fixed a bug in the scaling of multivariate data
using scalewt: when units of the variable were too heterogeneous,
variables with the smallest variances were not scaled. This did
not affect dudi.pca, but other functions such as discrimin.
2010-02-10 12:12 sdray
* man/rlq.Rd: Correct a typo in the description
2010-02-10 12:00 sdray
* man/rlq.Rd: Correct a typo in the description
2009-12-18 08:46 sdray
* man/fourthcorner.Rd: Add information on the outputs of the print
and summary functions
2009-12-09 14:49 sdray
* man/banque.Rd, man/dudi.fca.Rd, man/fruits.Rd, man/meau.Rd,
man/meaudret.Rd, man/monde84.Rd, man/ours.Rd, man/rhizobium.Rd,
man/woangers.Rd, man/worksurv.Rd: Correct the use of the command
'\item' in '\enumerate' environment
2009-12-04 13:33 sdray
* R/plot.4thcorner.R, man/fourthcorner.Rd, src/fourthcorner.c: The
argument 'type' in plot.4thcorner can now takes the value D2 to
plot correlation instead of homogeneity statistics in the case of
qualitative / quantitative association
2009-12-04 13:28 sdray
* man/dist.ktab.Rd, man/woangers.Rd: Put some examples in
'\dontrun' to speed up the checking of example
2009-12-03 13:27 sdray
* ChangeLog: ---------- release of ade4 1.4-14 ----------
2009-12-03 13:22 sdray
* DESCRIPTION: ---------- release of ade4 1.4-14 ----------
2009-12-01 10:01 sdray
* DESCRIPTION, man/area.plot.Rd, man/neig.Rd, man/oribatid.Rd: Use
the package 'deldir' instead of 'tripack' which has serious
license issues. Correct the use of the class polylist which is
not exported in the new version of maptools (0.7-27)
2009-11-12 12:08 thioulouse
* R/costatis.R: changes to the costatis function to remove cat
outputs in non-interactive mode (i.e., when scannf = FALSE)
2009-11-12 08:40 sdray
* R/s.match.class.R, man/s.match.class.Rd: Add new function
's.match.class' to represent two systems of coordinates and a
partitioning
2009-11-12 08:38 sdray
* R/betweencoinertia.R, R/withincoinertia.R, man/betweencoinertia.Rd,
man/withincoinertia.Rd: Add new functions
'betweencoinertia' and 'withincoinertia' for between- and
within-coinertia analysis
2009-11-09 12:06 thioulouse
* R/costatis.R, R/statico.R, man/costatis.Rd, man/statico.Rd,
man/wgcoia.Rd: New functions to perform STATICO and CO-STATIS
2009-10-30 08:49 sdray
* R/kdisteuclid.R: Use 'match.arg' to evaluate the value of the
'method' argument
2009-10-29 08:56 sdray
* DESCRIPTION: ---------- release of ade4 1.4-13 ----------
2009-10-28 15:29 abdufour
* data/meaudret.rda: addition of the species names in the dataset
2009-10-28 15:08 abdufour
* man/meau.Rd, man/meaudret.Rd: information about the link between
the two datasets meau and meaudret has been added
2009-10-28 14:13 sdray
* R/phylog.R, R/plot.phylog.R: Correct bug in the use of basic
regular expressions (argument 'extended' is deprecated R 2.11.0)
2009-10-27 14:50 spavoine
* R/originality.R, man/originality.Rd: new methods have been added
in the originality function
2009-10-27 14:08 spavoine
* data/woangers.rda, man/woangers.Rd, man/rhizobium.Rd, data/rhizobium.rda,
data/macroloire.rda, man/macroloire.Rd: three new data sets added
2009-10-27 14:05 spavoine
* R/dist.ktab.R, man/dist.ktab.Rd: new functions of distance for
multiple types of variables
2009-10-27 14:01 spavoine
* R/apqe.R, man/apqe.Rd: new functions for diversity partitioning
2009-10-27 13:59 spavoine
* R/mdpcoa.R, man/mdpcoa.Rd: new functions for multiple dpcoa
2009-10-23 12:21 sdray
* ChangeLog: ---------- release of ade4 1.4-12 ----------
2009-10-23 12:19 sdray
* DESCRIPTION: ---------- release of ade4 1.4-12 ----------
2009-10-21 14:18 sdray
* data/toxicity.rda, man/toxicity.Rd: Correct species names and
table dimensions (thanks to Jean Lobry)
2009-10-21 13:34 thioulouse
* R/dudi.R: bug on row.names in as.dudi (thanks to Jean Lobry)
2009-10-20 14:18 sdray
* R/newick2phylog.R: Correct bug in the use of basic regular
expressions
2009-10-20 14:15 sdray
* man/multispati.Rd, man/multispati.randtest.Rd,
man/multispati.rtest.Rd: update links to spdep functions in the
documentation
2009-10-02 09:07 simonpenel
* R/newick2phylog.R, man/s.value.Rd, man/variance.phylog.Rd: Minor
bugs have been fixes. Replace extended = FALSE by fixed = TRUE
2009-09-22 08:10 thioulouse
* man/scatter.dudi.Rd: added some precision about biplots in
scatter.dudi.Rd
2009-07-24 14:53 thioulouse
* R/pta.R: corrected a small bug in row names of supIX and supIY df
2009-05-11 09:19 sdray
* R/dist.binary.R, man/dist.binary.Rd: Numeric matrix can be used
for the 'df' argument (request of E. Paradis)
2009-04-20 15:53 sdray
* R/area.plot.R: argument nclasslegend is now active. bug
identified by C. Calenge
2009-04-01 11:11 sdray
* ChangeLog: ---------- release of ade4 1.4-11 ----------
2009-04-01 11:07 sdray
* DESCRIPTION: ---------- release of ade4 1.4-11 ----------
2009-03-26 14:14 sdray
* man/buech.Rd, man/corvus.Rd, man/dist.binary.Rd,
man/dist.prop.Rd, man/dist.quant.Rd, man/kplot.mcoa.Rd,
man/kplot.pta.Rd, man/ktab.Rd, man/maples.Rd, man/mcoa.Rd,
man/mfa.Rd, man/njplot.Rd, man/orthogram.Rd, man/phylog.Rd,
man/randtest.coinertia.Rd, man/scatter.fca.Rd,
man/scatterutil.Rd, man/supcol.Rd, man/withinpca.Rd: Make Rd
files pass R-2.9.0 (devel) parser 2 checks
2009-02-03 12:39 abdufour
* man/randEH.Rd: replace PD in EH
2009-02-03 12:32 abdufour
* man/optimEH.Rd: replace PD in EH
2008-12-12 14:04 sdray
* ChangeLog: ---------- release of ade4 1.4-10 ----------
2008-12-12 14:03 sdray
* DESCRIPTION: ---------- release of ade4 1.4-10 ----------
2008-12-11 14:45 sdray
* R/combine.4thcorner.R, R/fourthcorner.R, R/fourthcorner2.R,
R/plot.4thcorner.R, R/print.4thcorner.R, R/summary.4thcorner.R,
man/fourthcorner.Rd, src/fourthcorner.c: new functions
implementing the fourthcorner method and extensions presented in
Dray and Legendre (2008)
2008-12-11 13:23 sdray
* src/adesub.c, src/adesub.h, src/testdim.c: new functions to
permute matrices used in testdim and fourthcorner are now in
adesub
2008-12-11 13:14 sdray
* man/RVdist.randtest.Rd, man/randtest-internal.Rd,
man/scatterutil.Rd: remove empty sections
2008-12-11 13:05 sdray
* man/dudi.fca.Rd: add a second argument to the \item macro
2008-12-11 13:04 sdray
* man/witwit.coa.Rd: remove invalid whitespaces
2008-12-01 15:34 jombart
* R/gearymoran.R: small typo repared
2008-12-01 15:19 jombart
* R/gearymoran.R: Added a match.arg to gearymoran (in multivariate
case, was messed up.
2008-06-30 10:55 sdray
* R/niche.R: Add a global test of the average marginality for all
species
2008-06-13 10:33 jombart
* R/dudi.acm.R, R/dudi.coa.R, R/dudi.dec.R, R/dudi.fca.R,
R/dudi.hillsmith.R, R/dudi.mix.R, R/dudi.nsc.R, R/dudi.pca.R:
Added a as.data.frame(df) to dudi methods.
2008-06-11 11:04 sdray
* data/abouheif.eg.rda: new data files
2008-06-11 10:59 sdray
* data/acacia.rda, data/aminoacyl.rda, data/apis108.rda,
data/ardeche.rda, data/arrival.rda, data/atlas.rda,
data/atya.rda, data/avijons.rda, data/avimedi.rda,
data/aviurba.rda, data/bacteria.rda, data/banque.rda,
data/baran95.rda, data/bf88.rda, data/bordeaux.rda,
data/bsetal97.rda, data/buech.rda, data/butterfly.rda,
data/capitales.rda, data/carni19.rda, data/carni70.rda,
data/carniherbi49.rda, data/casitas.rda, data/chatcat.rda,
data/chats.rda, data/chazeb.rda, data/chevaine.rda,
data/clementines.rda, data/cnc2003.rda, data/coleo.rda,
data/corvus.rda, data/deug.rda, data/doubs.rda,
data/dunedata.rda, data/ecg.rda, data/ecomor.rda,
data/elec88.rda, data/escopage.rda, data/euro123.rda,
data/fission.rda, data/friday87.rda, data/fruits.rda,
data/ggtortoises.rda, data/granulo.rda, data/hdpg.rda,
data/housetasks.rda, data/humDNAm.rda, data/ichtyo.rda,
data/irishdata.rda, data/julliot.rda, data/jv73.rda,
data/kcponds.rda, data/lascaux.rda, data/lizards.rda,
data/macaca.rda, data/macon.rda, data/mafragh.rda,
data/maples.rda, data/mariages.rda, data/meau.rda,
data/meaudret.rda, data/microsatt.rda, data/mjrochet.rda,
data/mollusc.rda, data/monde84.rda, data/morphosport.rda,
data/newick.eg.rda, data/njplot.rda, data/olympic.rda,
data/oribatid.rda, data/ours.rda, data/palm.rda, data/pap.rda,
data/perthi02.rda, data/presid2002.rda, data/procella.rda,
data/rankrock.rda, data/rhone.rda, data/rpjdl.rda,
data/santacatalina.rda, data/sarcelles.rda, data/seconde.rda,
data/skulls.rda, data/steppe.rda, data/syndicats.rda,
data/t3012.rda, data/tarentaise.rda, data/taxo.eg.rda,
data/tintoodiel.rda, data/tithonia.rda, data/tortues.rda,
data/toxicity.rda, data/trichometeo.rda, data/ungulates.rda,
data/vegtf.rda, data/veuvage.rda, data/westafrica.rda,
data/worksurv.rda, data/yanomama.rda, data/zealand.rda: new data
files
2008-06-11 10:58 sdray
* data/abouheif.eg.rda, data/acacia.rda, data/aminoacyl.rda,
data/apis108.rda, data/ardeche.rda, data/arrival.rda,
data/atlas.rda, data/atya.rda, data/avijons.rda,
data/avimedi.rda, data/aviurba.rda, data/bacteria.rda,
data/banque.rda, data/baran95.rda, data/bf88.rda,
data/bordeaux.rda, data/bsetal97.rda, data/buech.rda,
data/butterfly.rda, data/capitales.rda, data/carni19.rda,
data/carni70.rda, data/carniherbi49.rda, data/casitas.rda,
data/chatcat.rda, data/chats.rda, data/chazeb.rda,
data/chevaine.rda, data/clementines.rda, data/cnc2003.rda,
data/coleo.rda, data/corvus.rda, data/deug.rda, data/doubs.rda,
data/dunedata.rda, data/ecg.rda, data/ecomor.rda,
data/elec88.rda, data/escopage.rda, data/euro123.rda,
data/fission.rda, data/friday87.rda, data/fruits.rda,
data/ggtortoises.rda, data/granulo.rda, data/hdpg.rda,
data/housetasks.rda, data/humDNAm.rda, data/ichtyo.rda,
data/irishdata.rda, data/julliot.rda, data/jv73.rda,
data/kcponds.rda, data/lascaux.rda, data/lizards.rda,
data/macaca.rda, data/macon.rda, data/mafragh.rda,
data/maples.rda, data/mariages.rda, data/meau.rda,
data/meaudret.rda, data/microsatt.rda, data/mjrochet.rda,
data/mollusc.rda, data/monde84.rda, data/morphosport.rda,
data/newick.eg.rda, data/njplot.rda, data/olympic.rda,
data/oribatid.rda, data/ours.rda, data/palm.rda, data/pap.rda,
data/perthi02.rda, data/presid2002.rda, data/procella.rda,
data/rankrock.rda, data/rhone.rda, data/rpjdl.rda,
data/santacatalina.rda, data/sarcelles.rda, data/seconde.rda,
data/skulls.rda, data/steppe.rda, data/syndicats.rda,
data/t3012.rda, data/tarentaise.rda, data/taxo.eg.rda,
data/tintoodiel.rda, data/tithonia.rda, data/tortues.rda,
data/toxicity.rda, data/trichometeo.rda, data/ungulates.rda,
data/vegtf.rda, data/veuvage.rda, data/westafrica.rda,
data/worksurv.rda, data/yanomama.rda, data/zealand.rda: remove
corrupted data files
2008-06-10 14:12 sdray
* ChangeLog, DESCRIPTION, INDEX, R, TITLE, data, inst, man, src:
move from trunk to pkg after initial import using cvs2svn
2008-06-10 14:01 sdray
* man: remove man folder
2008-06-10 14:01 sdray
* R: remove R folder
2008-06-10 14:12 sdray
* ChangeLog, DESCRIPTION, INDEX, R, TITLE, data, inst, man, src:
move from trunk to pkg after initial import using cvs2svn
2008-05-23 14:12 dray
* ChangeLog, DESCRIPTION: ---------- release of ade4 1.4-9
----------
2008-05-23 12:12 dray
* R/niche.R: Correct a syntax error
2008-05-23 12:00 dray
* R/mantel.randtest.R, R/procuste.randtest.R: Correct a bug. The
number of repetitions was not correct ((nrepet + 1) instead of
nrepet)
2008-05-23 11:53 dray
* R/niche.R, R/randtest.between.R, R/randtest.coinertia.R,
R/randtest.discrimin.R: Correct a bug. The number of repetitions
was not correct ((nrepet + 1) instead of nrepet)
2008-05-23 11:46 dray
* R/krandtest.R, R/randtest.amova.R, man/krandtest.Rd: the class
krandtest now accepts a vector of alternative hypotheses instead
of a common alternative hypothesis for the k tests (email of Kim
Milferstedt on RHelp)
2008-05-16 13:54 dray
* ChangeLog, DESCRIPTION: ---------- release of ade4 1.4-8
----------
2008-05-07 11:29 jthioulo
* R/dudi.acm.R: bug correction (mail of JR Lobry on adelist):
(any(row.w) < 0) vs. (any(row.w < 0))
2008-05-07 11:27 jthioulo
* R/dudi.R: bug correction (mail of JR Lobry on adelist):
any(col.w) < 0 vs. any(col.w < 0)
2008-04-18 14:37 penel
* data/ggtortoises.rda: pixmap S3 objects transformed into S4 class
2008-04-18 13:33 dray
* ChangeLog, DESCRIPTION: ---------- release of ade4 1.4-7
----------
2008-04-18 13:31 dray
* data/capitales.rda: pixmap S3 objects transformed into S4 class
2008-04-17 11:05 dray
* ChangeLog, DESCRIPTION: ---------- release of ade4 1.4-6
----------
2008-04-16 17:02 dray
* R/phylog.R: Correct a bug in phylog.extract (mail of S. Ollier)
2008-04-16 16:36 dray
* src/adesub.c, src/adesub.h, src/testrlq.c: matcentragehi in now
in adesub
2008-04-16 16:33 dray
* R/nipals.R, man/nipals.Rd: New function for NIPALS algorithm,
i.e. PCA with (or without) NA
2008-04-16 16:31 dray
* man/randtest.Rd: add some words about the computation of pvalues
for two-sided test
2008-04-16 13:18 dufour
* man/ade4.package.Rd: *** empty log message ***
2008-04-16 10:12 dufour
* man/pcaiv.Rd: *** empty log message ***
2008-04-14 12:41 penel
* man/table.phylog.Rd: Example table.phylog set to dontrun
2008-04-02 11:16 dray
* man/multispati.Rd, man/vegtf.Rd: Update the source reference:
Dray et al. (2008)
2008-03-27 14:28 dufour
* man/dudi.pca.Rd: Modifications : explanations about values (cent
and norm) ; it{} into emph{}.
2008-03-27 13:47 dufour
* man/dudi.pca.Rd: Modification of explanations ($cent and $norm)
2008-03-26 10:29 dray
* R/sco.distri.R: correct a bug (identified by S. Pavoine): default
label argument was badly considered when one column contains only
O's
2008-03-20 15:10 dray
* R/scatter.R, R/scatterutil.R, man/scatter.Rd, man/scatterutil.Rd:
New utility function scatterutil.sco and scatterutil.convrot90
for 1D graphical representation
2008-03-20 15:06 dray
* R/sco.gauss.R, man/sco.gauss.Rd: New function sco.gauss for 1D
graphical representation
2008-03-20 15:05 dray
* R/sco.match.R, man/sco.match.Rd: New function sco.match for 1D
graphical representation
2008-03-20 15:05 dray
* R/sco.class.R, man/sco.class.Rd: New function sco.class for 1D
graphical representation
2008-03-20 15:05 dray
* R/sco.label.R, man/sco.label.Rd: New function sco.label for 1D
graphical representation
2008-03-19 16:00 dray
* R/sco.qual.R: Functions of this file are now in sco.label.R and
sco.gauss.R
2008-03-18 14:18 dray
* inst/CITATION: Add two new references to the CITATION file
2008-03-17 15:47 dray
* R/randtest.cca.R, R/randtest.pcaiv.R, R/randtest.pcaivortho.R,
man/randtest.pcaiv.Rd: News functions for permutation tests in
constrained analysis
2008-02-05 13:26 dray
* src/testdim.c: Correct a bug in memory allocation of the function
svdd
2008-01-29 15:07 jthioulo
* man/sco.label.Rd: added function: Draws evenly spaced labels,
each label linked to the corresponding value of a numeric score
2008-01-29 15:07 jthioulo
* man/sco.gauss.Rd: added function: Draws Gauss curves with the
same mean and variance as the scores of indivivuals belonging to
categories of several factors
2008-01-29 15:04 jthioulo
* man/veuvage.Rd: Correstion of illegal accented character in
exemple code
2008-01-29 15:04 jthioulo
* R/sco.qual.R: adds two functions: sco.gauss and sco.label (draw
Gauss curves on a score by categories of several factors)
2007-11-09 17:19 dray
* R/newick2phylog.R: Correct a bug. In newick2phylog.addtools,
eigen does not return an orthogonal basis when there are null
eigenvalues (Wscores). Vectors are now orthogonalized using qr
2007-10-16 14:41 penel
* DESCRIPTION: Change License to GPL (>=2)
2007-10-16 14:35 penel
* ChangeLog: *** empty log message ***
2007-10-12 11:37 penel
* ChangeLog, DESCRIPTION: ---------- release of ade4 1.4-5
----------
2007-10-11 15:50 penel
* man/dunedata.Rd, man/steppe.Rd: Replace non_function by Doctype
2007-10-09 10:54 penel
* src/testdim.c, src/tests.c: Correction of a bug in the
declaration of variables
2007-09-25 11:16 dray
* ChangeLog: ---------- release of ade4 1.4-4 ----------
2007-09-25 11:10 dray
* DESCRIPTION: ---------- release of ade4 1.4-4 ----------
2007-09-20 15:48 dray
* R/coinertia.R, R/dudi.R, R/dudi.pco.R: Modification of the call
of the imported function chooseaxes for the use of the ade4TkGUI
package
2007-09-17 16:23 dray
* R/within.pca.R, R/withinpca.R, man/ktab.Rd,
man/ktab.match2ktabs.Rd, man/pta.Rd, man/statis.Rd,
man/within.pca.Rd, man/withinpca.Rd: The function within.pca is
renamed withinpca
2007-09-17 15:12 dray
* R/ktab.R, man/ktab.Rd: Change the names of the arguments of the
function '[.ktab'
2007-09-17 13:05 dray
* man/amova.Rd, man/between.Rd, man/coinertia.Rd, man/corkdist.Rd,
man/discrimin.Rd, man/dpcoa.Rd, man/dudi.Rd, man/dudi.acm.Rd,
man/dudi.pco.Rd, man/foucart.Rd, man/is.euclid.Rd,
man/kplot.foucart.Rd, man/kplot.mcoa.Rd, man/kplot.mfa.Rd,
man/kplot.pta.Rd, man/kplot.sepan.Rd, man/kplot.statis.Rd,
man/krandtest.Rd, man/ktab.Rd, man/mcoa.Rd, man/mfa.Rd,
man/multispati.Rd, man/neig.Rd, man/niche.Rd, man/orthobasis.Rd,
man/pcaiv.Rd, man/phylog.Rd, man/plot.phylog.Rd, man/procuste.Rd,
man/pta.Rd, man/randtest.Rd, man/randtest.amova.Rd,
man/randtest.between.Rd, man/randtest.coinertia.Rd,
man/randtest.discrimin.Rd, man/reconst.Rd, man/rlq.Rd,
man/rtest.Rd, man/rtest.between.Rd, man/rtest.discrimin.Rd,
man/scatter.acm.Rd, man/scatter.coa.Rd, man/scatter.dudi.Rd,
man/scatter.fca.Rd, man/score.acm.Rd, man/score.coa.Rd,
man/score.mix.Rd, man/score.pca.Rd, man/sepan.Rd, man/statis.Rd,
man/supcol.Rd, man/suprow.Rd, man/testdim.Rd, man/within.Rd,
man/witwit.coa.Rd: Correct usage entries for S3 methods
2007-09-14 11:58 jthioulo
* DESCRIPTION: suggests ade4TkGUI
2007-09-14 09:15 jthioulo
* R/randtest.between.R: modif eval pour ne pas chercher dans
l'environnement global directement
2007-09-13 11:57 dray
* src/Makevars: replace CRLF (DOS) by LF (Unix)
2007-09-13 11:18 jthioulo
* R/coinertia.R, R/dudi.R, R/dudi.pco.R: modif pour variable
globale ade4TkGUIFlag
2007-09-06 17:08 dray
* man/PI2newick.Rd, man/RV.rtest.Rd, man/RVdist.randtest.Rd,
man/aminoacyl.Rd, man/ardeche.Rd, man/area.plot.Rd,
man/as.taxo.Rd, man/atlas.Rd, man/atya.Rd, man/avijons.Rd,
man/aviurba.Rd, man/baran95.Rd, man/between.Rd,
man/bicenter.wt.Rd, man/buech.Rd, man/cailliez.Rd,
man/carni70.Rd, man/casitas.Rd, man/cca.Rd, man/chatcat.Rd,
man/chats.Rd, man/clementines.Rd, man/coinertia.Rd,
man/corkdist.Rd, man/discrimin.Rd, man/discrimin.coa.Rd,
man/dist.binary.Rd, man/dist.dudi.Rd, man/dist.genet.Rd,
man/dist.neig.Rd, man/dist.prop.Rd, man/dist.quant.Rd,
man/divcmax.Rd, man/dotchart.phylog.Rd, man/dotcircle.Rd,
man/doubs.Rd, man/dpcoa.Rd, man/dudi.Rd, man/dudi.acm.Rd,
man/dudi.coa.Rd, man/dudi.dec.Rd, man/dudi.fca.Rd,
man/dudi.mix.Rd, man/dudi.nsc.Rd, man/dudi.pca.Rd,
man/dudi.pco.Rd, man/escopage.Rd, man/euro123.Rd, man/fruits.Rd,
man/fuzzygenet.Rd, man/gearymoran.Rd, man/genet.Rd,
man/granulo.Rd, man/gridrowcol.Rd, man/ichtyo.Rd,
man/inertia.dudi.Rd, man/is.euclid.Rd, man/julliot.Rd,
man/jv73.Rd, man/kdist.Rd, man/kdist2ktab.Rd, man/kdisteuclid.Rd,
man/kplot.foucart.Rd, man/kplot.mcoa.Rd, man/kplot.mfa.Rd,
man/kplot.pta.Rd, man/kplot.sepan.Rd, man/kplot.statis.Rd,
man/ktab.Rd, man/ktab.data.frame.Rd, man/ktab.list.df.Rd,
man/ktab.list.dudi.Rd, man/ktab.match2ktabs.Rd,
man/ktab.within.Rd, man/lascaux.Rd, man/lingoes.Rd, man/macon.Rd,
man/mafragh.Rd, man/mantel.rtest.Rd, man/mariages.Rd,
man/mcoa.Rd, man/meau.Rd, man/meaudret.Rd, man/mfa.Rd,
man/microsatt.Rd, man/mjrochet.Rd, man/mld.Rd, man/mollusc.Rd,
man/monde84.Rd, man/morphosport.Rd, man/mstree.Rd,
man/multispati.Rd, man/multispati.randtest.Rd,
man/multispati.rtest.Rd, man/neig.Rd, man/newick.eg.Rd,
man/newick2phylog.Rd, man/niche.Rd, man/njplot.Rd,
man/orthobasis.Rd, man/orthogram.Rd, man/ours.Rd, man/palm.Rd,
man/pcaiv.Rd, man/pcaivortho.Rd, man/pcoscaled.Rd, man/phylog.Rd,
man/plot.phylog.Rd, man/procuste.Rd, man/procuste.rtest.Rd,
man/pta.Rd, man/quasieuclid.Rd, man/reconst.Rd, man/rhone.Rd,
man/rpjdl.Rd, man/rtest.Rd, man/rtest.between.Rd,
man/rtest.discrimin.Rd, man/s.arrow.Rd, man/s.chull.Rd,
man/s.class.Rd, man/s.corcircle.Rd, man/s.distri.Rd,
man/s.hist.Rd, man/s.image.Rd, man/s.kde2d.Rd, man/s.label.Rd,
man/s.logo.Rd, man/s.match.Rd, man/s.multinom.Rd,
man/s.traject.Rd, man/s.value.Rd, man/sarcelles.Rd,
man/scalewt.Rd, man/scatter.Rd, man/scatter.acm.Rd,
man/scatter.coa.Rd, man/scatter.dudi.Rd, man/scatter.fca.Rd,
man/sco.boxplot.Rd, man/sco.distri.Rd, man/sco.quant.Rd,
man/score.Rd, man/score.acm.Rd, man/score.coa.Rd,
man/score.mix.Rd, man/score.pca.Rd, man/sepan.Rd, man/statis.Rd,
man/steppe.Rd, man/supcol.Rd, man/suprow.Rd,
man/symbols.phylog.Rd, man/t3012.Rd, man/table.cont.Rd,
man/table.dist.Rd, man/table.paint.Rd, man/table.phylog.Rd,
man/table.value.Rd, man/tarentaise.Rd, man/triangle.class.Rd,
man/triangle.plot.Rd, man/trichometeo.Rd, man/ungulates.Rd,
man/uniquewt.df.Rd, man/variance.phylog.Rd, man/veuvage.Rd,
man/westafrica.Rd, man/within.Rd, man/within.pca.Rd,
man/witwit.coa.Rd, man/worksurv.Rd: Added the encoding of Rd
files and remove the email of Daniel Chessel (he is retired)
2007-09-06 15:11 dray
* R/scatter.acm.R: Clean R files: replace T by TRUE.
2007-09-06 15:03 dray
* R/newick2phylog.R: Clean R files: remove multiple function
definitions (floc1(s) becomes floc1,floc2,floc3. Thanks to
UsagePackageCheck of codetools
2007-09-06 14:55 dray
* R/multispati.R, R/multispati.randtest.R, R/multispati.rtest.R,
R/neig.R, R/orthobasis.R, R/s.image.R, R/s.kde2d.R, R/s.logo.R:
Clean R files: correct imported function definition. Thanks to
UsagePackageCheck of codetools
2007-09-06 13:53 dray
* R/orthogram.R: Correct a bug: test for the choice between
orthobas, neig or phylog
2007-09-06 12:21 dray
* R/scatter.acm.R: Correct a bug: replace score. by score.acm
2007-09-06 12:19 dray
* R/kplot.foucart.R, R/kplot.mfa.R, R/mcoa.R, R/rlq.R,
R/score.coa.R, R/sepan.R, R/variance.phylog.R: Clean R files:
remove local variables assigned but not used. Thanks to
checkUsagePackage of codetools
2007-09-06 11:58 dray
* R/PI2newick.R, R/RV.rtest.R, R/RVdist.randtest.R, R/amova.R,
R/area.plot.R, R/as.taxo.R, R/between.R, R/coinertia.R,
R/corkdist.R, R/disc.R, R/discrimin.R, R/discrimin.coa.R,
R/dist.dudi.R, R/dist.genet.R, R/dotcircle.R, R/dudi.coa.R,
R/dudi.dec.R, R/dudi.nsc.R, R/foucart.R, R/fuzzygenet.R,
R/genet.R, R/gridrowcol.R, R/kplot.foucart.R, R/kplot.mfa.R,
R/kplot.statis.R, R/ktab.R, R/ktab.list.dudi.R,
R/ktab.match2ktabs.R, R/ktab.within.R, R/lingoes.R, R/mcoa.R,
R/mld.R, R/multispati.R, R/newick2phylog.R, R/niche.R,
R/optimEH.R, R/orthobasis.R, R/orthogram.R, R/pcaiv.R,
R/phylog.R, R/plot.phylog.R, R/procuste.R, R/rlq.R,
R/rtest.between.R, R/s.corcircle.R, R/s.hist.R, R/s.image.R,
R/scatter.R, R/sco.distri.R, R/score.acm.R, R/score.coa.R,
R/score.mix.R, R/sepan.R, R/statis.R, R/symbols.phylog.R,
R/table.cont.R, R/table.phylog.R, R/uniquewt.df.R,
R/variance.phylog.R, R/within.R, R/within.pca.R: Clean R files:
remove local variables assigned but not used. Thanks to
checkUsagePackage of codetools
2007-09-06 08:08 dray
* man/bordeaux.Rd, man/cca.Rd, man/dudi.hillsmith.Rd,
man/elec88.Rd, man/seconde.Rd: Clean Rd files: remove unmatched
right brace
2007-09-04 16:12 dray
* R/testdim.R, man/testdim.Rd, src/Makevars, src/testdim.c: New
function testdim to estimate the number of axes in multivariate
analysis
2007-09-04 15:07 dray
* R/gearymoran.R, R/krandtest.R, R/niche.R, R/orthogram.R,
R/randtest.amova.R, man/gearymoran.Rd, man/krandtest.Rd,
man/niche.Rd, man/orthogram.Rd: reimplementation of the class
krandtest and new function as.krandtest
2007-09-04 14:50 dray
* man/vegtf.Rd: correction of a bug in the example section
2007-09-03 16:53 dray
* R/score.coa.R, man/score.coa.Rd: new function reciprocal.coa (see
http://listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00007.html)
2007-09-03 16:26 dray
* R/sco.distri.R, man/sco.distri.Rd: sco.distri returns a
data.frame with means and variances (see
http://listes.univ-lyon1.fr/wws/arc/adelist/2007-06/msg00018.html)
2007-09-03 15:24 dray
* R/scatter.R, R/sepan.R, R/witwitsepan.R: Add yaxt argument to
scatterutil.eigen (see
http://listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00022.html)
2007-09-03 15:04 dray
* R/multispati.R: Correct legend in plot.multispati
2007-09-03 14:58 dray
* data/vegtf.rda, man/vegtf.Rd: New vegetation data set to
illustrate multispati analysis
2007-09-03 14:51 dray
* R/niche.R, man/niche.Rd: New functions niche.param and
rtest.niche
2007-08-29 16:20 dray
* R/area.plot.R: the function area2poly is modified to export the
bbox attribute for each polygon
2007-08-29 16:00 dray
* R/s.corcircle.R: correct bug of the grid argument. see
http://listes.univ-lyon1.fr/wws/arc/adelist/2007-07/msg00001.html
2007-08-29 15:47 dray
* R/randtest-internal.R, R/rlq.R: correct bugs in memory allocation
(C interface). These bugs have been identified using valgrind by
B. Ripley (12/06/2007)
2007-06-15 07:49 dray
* man/dunedata.Rd: correct the number of rows and columns in the
help file
2007-04-16 12:56 dray
* ChangeLog, DESCRIPTION: ---------- release of ade4 1.4-3
----------
2007-04-12 13:39 dray
* man/suprow.Rd: correct the example section
2007-04-12 13:08 dray
* ChangeLog: New ChangeLog
2007-04-12 12:58 dray
* data/atlas.rda, data/avijons.rda, data/aviurba.rda,
data/baran95.rda, data/bf88.rda, data/chevaine.rda,
data/cnc2003.rda, data/elec88.rda, data/monde84.rda,
data/rankrock.rda, data/rpjdl.rda, data/sarcelles.rda,
data/steppe.rda, data/t3012.rda, data/tarentaise.rda,
data/veuvage.rda, data/westafrica.rda: remove non ASCII
characters in data
2007-03-26 16:47 jombart
* ChangeLog, R/dudi.pco.R: reviewed by: <delete if not using a
buddy>
* R/dudi.pco.R: sub and csub arguments are now actually passed to
s.label
2007-03-12 14:34 jombart
* ChangeLog, R/add.scatter.R, man/add.scatter.Rd, man/scatter.Rd: *
R/scatter.R: removed add.scatter.eig
* man/scatter.Rd: removed add.scatter.eig
* R/add.scatter.R: new functions add.scatter and add.scatter.eig
* man/add.scatter.Rd: doc for add.scatter and add.scatter.eig
2007-03-12 14:27 jombart
* R/scatter.add.R, man/scatter.add.Rd: *** empty log message ***
2007-03-12 14:06 jombart
* ChangeLog, R/add.graph.R: reviewed by: <delete if not using a
buddy>
* R/add.graph.R:
* R/dpcoa.R:
* R/dudi.pco.R:
* R/kplot.sepan.R:
* R/mfa.R:
* R/pta.R:
* R/scatter.R:
* R/scatter.add.R:
* R/scatter.coa.R:
* R/scatter.dudi.R:
* R/statis.R:
* man/scatter.Rd:
* man/scatter.add.Rd:
2007-03-12 14:04 jombart
* ChangeLog, R/dpcoa.R, R/dudi.pco.R, R/kplot.sepan.R, R/mfa.R,
R/pta.R, R/scatter.R, R/scatter.add.R, R/scatter.coa.R,
R/scatter.dudi.R, R/statis.R, man/add.graph.Rd, man/scatter.Rd,
man/scatter.add.Rd: reviewed by: <delete if not using a buddy>
* R/dpcoa.R:
* R/dudi.pco.R:
* R/kplot.sepan.R:
* R/mfa.R:
* R/pta.R:
* R/scatter.R:
* R/scatter.add.R:
* R/scatter.coa.R:
* R/scatter.dudi.R:
* R/statis.R:
* man/add.graph.Rd:
* man/scatter.Rd:
* man/scatter.add.Rd:
2007-03-10 10:38 jombart
* ChangeLog, R/add.graph.R, R/dpcoa.R, R/dudi.pco.R,
R/kplot.sepan.R, R/mfa.R, R/pta.R, R/scatter.R, R/scatter.coa.R,
R/scatter.dudi.R, R/statis.R, man/add.graph.Rd, man/dudi.pca.Rd,
man/scatter.Rd, man/scatter.dudi.Rd: reviewed by: <delete if not
using a buddy>
* R/add.graph.R: ajout de la fonction (contient add.graph et la
nouvelle version de add.scatter.eig)
* man/add.graph.Rd: ajout de la doc (add.graph et
add.scatter.eig)
* R/dpcoa.R: appel de add.scatter.eig: nf supprime
* R/dudi.pco.R: appel de add.scatter.eig: nf supprime
* R/kplot.sepan.R: appel de add.scatter.eig: nf supprime
* R/mfa.R: appel de add.scatter.eig: nf supprime
* R/pta.R: appel de add.scatter.eig: nf supprime
* R/scatter.R: add.scatter.eig supprime (migre vers add.graph.R)
* R/scatter.coa.R: appel de add.scatter.eig: nf supprime
* R/scatter.dudi.R: appel de add.scatter.eig: nf supprime
* R/statis.R: appel de add.scatter.eig: nf supprime
* man/dudi.pca.Rd: modifications faites par Anne
* man/scatter.Rd: enleve add.scatter.eig de la doc (migre vers
add.graph.Rd)
* man/scatter.dudi.Rd: appel de add.scatter.eig: nf supprime
2007-03-07 18:46 jombart
* ChangeLog, data/rpjdl.rda: reviewed by: <delete if not using a
buddy>
* data/rpjdl.rda: removed accents
2007-02-19 09:53 jthioulo
* ChangeLog, R/s.arrow.R, man/s.arrow.Rd: * R/s.arrow.R: added the
"boxes" argument
* man/s.arrow.Rd: added the "boxes" argument
2007-02-16 09:13 dray
* ChangeLog, man/orthogram.Rd: * man/orthogram.Rd: update the
reference to Ollier et al.
