https://github.com/cran/MuMIn
Tip revision: c34a6ff5a78401b7e5681b8eca1ff3fda6b01dc9 authored by Kamil Bartoń on 23 January 2013, 00:00:00 UTC
version 1.9.0
version 1.9.0
Tip revision: c34a6ff
AICc.Rd
\name{AICc}
\alias{AICc}
\encoding{utf-8}
\title{Second-order Akaike Information Criterion}
\description{
Calculate second-order Akaike information criterion for one or several fitted
model objects (AIC\eqn{_{c}}{c}, AIC for small samples). }
\usage{
AICc(object, ..., k = 2, REML = NULL)
}
\arguments{
\item{object}{a fitted model object for which there exists a \code{logLik}
method, or a \code{logLik} object. }
\item{\dots}{optionally more fitted model objects. }
\item{k}{the \sQuote{penalty} per parameter to be used; the default \code{k} =
2 is the classical AIC. }
\item{REML}{ optional logical value, passed to the \code{logLik} method
indicating whether the restricted log-likelihood or log-likelihood should be
used. The default is to use the method used for model estimation.
}
}
\value{
If just one object is provided, returns a numeric value with the
corresponding AIC\eqn{_{c}}{c}; if more than one object are provided, returns a
\code{data.frame} with rows corresponding to the objects and columns
representing the number of parameters in the model (df) and AIC\eqn{_{c}}{c}.
}
\note{
AIC\eqn{_{c}}{c} should be used instead AIC when sample size is small in
comparison to the number of estimated parameters (Burnham & Anderson 2002
recommend its use when \eqn{n / K < 40}).
}
\references{
Burnham, K. P. and Anderson, D. R (2002) \emph{Model selection and multimodel
inference: a practical information-theoretic approach}. 2nd ed. New York,
Springer-Verlag.
Hurvich, C. M. and Tsai, C.-L. (1989) Regression and time series model selection
in small samples, \emph{Biometrika} 76: 297–307.
}
\author{Kamil Barto\enc{ń}{n}}
\seealso{
Akaike's An Information Criterion: \code{\link{AIC}}
Other implementations:
\code{\link[AICcmodavg]{AICc}} in package \pkg{AICcmodavg},
\code{\link[bbmle]{AICc}} in package \pkg{bbmle} and
\code{\link[glmulti]{aicc}} in package \pkg{glmulti}
}
\examples{
#Model-averaging mixed models
library(nlme)
data(Orthodont, package = "nlme")
# Fit model by REML
fm2 <- lme(distance ~ Sex*age, data = Orthodont,
random = ~ 1|Subject / Sex, method = "REML")
# Model selection: ranking by AICc using ML
ms2 <- dredge(fm2, trace = TRUE, rank = "AICc", REML = FALSE)
(attr(ms2, "rank.call"))
# Get the models (fitted by REML, as in the global model)
fmList <- get.models(ms2, 1:4)
# Because the models originate from 'dredge(..., rank=AICc, REML=FALSE)',
# the default weights in 'model.avg' are ML based:
summary(model.avg(fmList))
# same result
#model.avg(fmList, rank = "AICc", rank.args = list(REML=FALSE))
}
\keyword{models}