https://github.com/Data2Dynamics/d2d
Tip revision: 7df724532dd4562863cbc7b98a066ab4a905c9a8 authored by Andreas Raue on 06 September 2013, 06:52:27 UTC
major update: this implements a revised version of the c-code that should largely suppress error messages like "nan in residuals" and also some "too much work".
major update: this implements a revised version of the c-code that should largely suppress error messages like "nan in residuals" and also some "too much work".
Tip revision: 7df7245
.hgignore
syntax: glob
arFramework3/arInitUser.m
arFramework3/sundials-2.4.0/
arFramework3/sundials-2.5.0/
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_ActD_7A81B29C9F0C88B8E848F87F893B58E8.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_ActD_7A81B29C9F0C88B8E848F87F893B58E8.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_ActD_8DCE2D25F345B9166C02388648F319AC.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_ActD_8DCE2D25F345B9166C02388648F319AC.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_9FA901423CFE9C212568099156AC87C4.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_9FA901423CFE9C212568099156AC87C4.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_FBCC986563E4975257C3C801F022AD75.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_FBCC986563E4975257C3C801F022AD75.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_pEpoR_6DFA514776D87E6D080687C90D25F4FC.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_pEpoR_6DFA514776D87E6D080687C90D25F4FC.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_pEpoR_B1E22543EC86CB3248E4E635190A1792.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_CISoe_pEpoR_B1E22543EC86CB3248E4E635190A1792.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_Concentrations_AEA7D1BEDB010DA1DAB761B169898DCA.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_Concentrations_AEA7D1BEDB010DA1DAB761B169898DCA.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_05B26F66519BA863A6E19FF16E999ADC.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_05B26F66519BA863A6E19FF16E999ADC.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_1DEEE5255E61E434D356961DE37E260F.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_1DEEE5255E61E434D356961DE37E260F.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_274F2DEA3399C5680C864FAB321C45FC.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_274F2DEA3399C5680C864FAB321C45FC.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_8C9723790F9F53E2B7DB93C2A45AB48F.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_8C9723790F9F53E2B7DB93C2A45AB48F.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_8F6BFCAB67B13BDDEDC069619269863F.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_8F6BFCAB67B13BDDEDC069619269863F.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_EF65952506AEEC05BFAC143DA94592E2.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_30min_EF65952506AEEC05BFAC143DA94592E2.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_2779A2C8B659DAA1BCFD5CF03991A01B.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_2779A2C8B659DAA1BCFD5CF03991A01B.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_4186E54E7388C88A34FEF7061E38FC85.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_4186E54E7388C88A34FEF7061E38FC85.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_614E1818A3AECD168D024B041B20FB1C.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_614E1818A3AECD168D024B041B20FB1C.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_736F0873BD0465BA1DCE2DDD4713CAD1.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_736F0873BD0465BA1DCE2DDD4713CAD1.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_A9A5D9A5E91504DC465E0AB659DEC428.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_7min_A9A5D9A5E91504DC465E0AB659DEC428.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_1B3FB69D43B373014264B8994AA94A7C.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_1B3FB69D43B373014264B8994AA94A7C.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_1EAC6F5F237B981F31E3B6D7ABA1CC76.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_1EAC6F5F237B981F31E3B6D7ABA1CC76.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_25F73C1432C761F80E87CA298F1C8532.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_25F73C1432C761F80E87CA298F1C8532.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_5ED5A774FE02F1729E83DCF0C55A4FF0.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_5ED5A774FE02F1729E83DCF0C55A4FF0.h
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arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_CIS_90min_7EB8762E426CAAC6B547E740B13C3DFD.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_0ECE4C38E9575DA0307460AFD3B71AE8.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_0ECE4C38E9575DA0307460AFD3B71AE8.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_36A097AB71962FCFAA84B4964B830EB8.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_36A097AB71962FCFAA84B4964B830EB8.h
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arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_41ED5A90951E4A8B7E64AA2BE20EFB84.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_4A9F253C6F7E91EDCB53AD024B4BD3AB.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_4A9F253C6F7E91EDCB53AD024B4BD3AB.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_567FA000B5E91746E4D6FB3BD591D89B.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_567FA000B5E91746E4D6FB3BD591D89B.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_6F54DC425145FF38D0D14C17350F74F6.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_6F54DC425145FF38D0D14C17350F74F6.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_76FDFE9F76024DA17F23428247876BEA.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_76FDFE9F76024DA17F23428247876BEA.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_8C1FE285BC51BA3DFB539C7D1E2DD6A9.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_8C1FE285BC51BA3DFB539C7D1E2DD6A9.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_9EAF4B15ABDE7962A1CCEF96DE334A53.c
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arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_AF4890D0E64BCF4C1B9E759DB40F4A15.c
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arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_C9F46E99B6B13B23738493B03B3B8921.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_C9F46E99B6B13B23738493B03B3B8921.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_DDEDF7A2574CEE82400EB2C387180882.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_DoseResp_pSTAT5_10min_fine_DDEDF7A2574CEE82400EB2C387180882.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_Fine_F1B56959F65BE53A858934CE331CA766.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_Fine_F1B56959F65BE53A858934CE331CA766.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_Long_D4A7CF13E20CFB97376077200C808872.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_Long_D4A7CF13E20CFB97376077200C808872.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_RNA_13F626E7B8E536038FEF1AAF81F34858.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_RNA_13F626E7B8E536038FEF1AAF81F34858.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SHP1oe_6F45D7EDB8862B7B020EC0E07A6CA5EE.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SHP1oe_6F45D7EDB8862B7B020EC0E07A6CA5EE.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SHP1oe_7CF29CA251E680A172D1A936063064CE.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SHP1oe_7CF29CA251E680A172D1A936063064CE.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SOCS3oe_35A07288FF4CD74A64A634A4E2AA4870.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SOCS3oe_35A07288FF4CD74A64A634A4E2AA4870.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SOCS3oe_3D1369D19084F13687307958FFD97DC6.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/CFUE_SOCS3oe_3D1369D19084F13687307958FFD97DC6.h
arFramework3/Examples/Bachmann_MSB2011/Compiled/arSimuCalcFunctions.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/arSimuCalcVariables.c
arFramework3/Examples/Bachmann_MSB2011/Compiled/jak2_stat5_feedbacks_0776086B2E9D412D3C4A386E9188A1A1.c
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arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/cvodes_spbcgs.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/cvodes_spgmr.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/cvodes_spils.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/cvodes_sptfqmr.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/epo_binding_8F138959B3568B7D0E23F00C60A2C102.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/epo_int_rep_98A1737F8D36450ECF61692BC3B6FD36.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/nvector_serial.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_band.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_dense.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_direct.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_iterative.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_math.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_nvector.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_spbcgs.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_spgmr.obj
arFramework3/Examples/Becker_Science2010/Compiled/code_130716/mexw32/sundials_sptfqmr.obj
arFramework3/Examples/Becker_Science2010/arSimuCalcFun_7BC4C7FB7C66F02EC815753D518BE16E.mexw32