https://github.com/galaxyproject/galaxy
Tip revision: 4e845985d32b423106a31eae711b702cffea1df6 authored by John Chilton on 04 July 2020, 15:42:13 UTC
Version 20.5.0 of app (tag galaxy-app-20.5.0).
Version 20.5.0 of app (tag galaxy-app-20.5.0).
Tip revision: 4e84598
ratmine.xml
<?xml version="1.0"?>
<!--
If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
the initial response. If value of 'URL_method' is 'post', any additional params coming back in the
initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
-->
<tool name="Ratmine" id="ratmine" tool_type="data_source" version="1.0.0">
<description>server</description>
<command><![CDATA[
python '$__tool_directory__/data_source.py' '$output' $__app__.config.output_size_limit
]]></command>
<inputs action="http://ratmine.mcw.edu/ratmine/begin.do" check_values="false" method="get">
<display>go to Ratmine server $GALAXY_URL</display>
<param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=ratmine" />
</inputs>
<request_param_translation>
<request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
<request_param galaxy_name="URL" remote_name="URL" missing="" />
<request_param galaxy_name="dbkey" remote_name="db" missing="?" />
<request_param galaxy_name="organism" remote_name="organism" missing="" />
<request_param galaxy_name="table" remote_name="table" missing="" />
<request_param galaxy_name="description" remote_name="description" missing="" />
<request_param galaxy_name="name" remote_name="name" missing="Ratmine query" />
<request_param galaxy_name="info" remote_name="info" missing="" />
<request_param galaxy_name="data_type" remote_name="data_type" missing="auto" >
<value_translation>
<value galaxy_value="auto" remote_value="txt" /> <!-- intermine currently always provides 'txt', make this auto detect -->
</value_translation>
</request_param>
</request_param_translation>
<uihints minwidth="800"/>
<outputs>
<data name="output" format="txt" />
</outputs>
<options sanitize="False" refresh="True"/>
</tool>