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Raw File
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Tip revision: 74eca3c953c6c99c3a5ccdc780c0ea273a5c305e authored by John Chilton on 15 October 2020, 16:15:17 UTC
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Tip revision: 74eca3c
all_fasta.loc.sample
#This file lists the locations and dbkeys of all the fasta files
#under the "genome" directory (a directory that contains a directory
#for each build). The script extract_fasta.py will generate the file
#all_fasta.loc. This file has the format (white space characters are
#TAB characters):
#
#<unique_build_id> <dbkey> <display_name> <file_path>
#
#So, all_fasta.loc could look something like this:
#
#apiMel3 apiMel3 Honeybee (Apis mellifera): apiMel3 /path/to/genome/apiMel3/apiMel3.fa
#hg19canon hg19 Human (Homo sapiens): hg19 Canonical /path/to/genome/hg19/hg19canon.fa
#hg19full hg19 Human (Homo sapiens): hg19 Full /path/to/genome/hg19/hg19full.fa
#
#Your all_fasta.loc file should contain an entry for each individual
#fasta file. So there will be multiple fasta files for each build,
#such as with hg19 above.
#