https://github.com/galaxyproject/galaxy
Tip revision: 74eca3c953c6c99c3a5ccdc780c0ea273a5c305e authored by John Chilton on 15 October 2020, 16:15:17 UTC
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Tip revision: 74eca3c
quality_scores.loc.sample
#This is a sample file distributed with Galaxy that is used by some
#regional variation tools. The quality_scores.loc file has this format (white
#space characters are TAB characters):
#
#<build> <QualityScoreDirectoryPath>
#
#So, for example, if you had panTro2 qualit score files stored in
#/depot/data2/galaxy/panTro2/quality_scores, then the quality_scores.loc entry
#would look like this:
#
#panTro2 /depot/data2/galaxy/panTro2/quality_scores
#
#and your /depot/data2/galaxy/panTro2/quality_scores directory would
#contain all of your quality score files (e.g.):
#
#-rw-r--r-- 1 gua110 galaxy 10964768 2007-10-02 10:33 chr10.qa.bqv
#-rw-r--r-- 1 gua110 galaxy 1749899 2007-10-02 10:33 chr10_random.qa.bqv
#-rw-r--r-- 1 gua110 galaxy 11310721 2007-10-02 10:33 chr11.qa.bqv
#...etc...
#
#Your quality_scores.loc file should include an entry per line for each quality score
#file you have stored. For example:
#
#panTro2 /depot/data2/galaxy/panTro2/quality_scores
#rheMac2 /depot/data2/galaxy/rheMac2/quality_scores
#ponAbe2 /depot/data2/galaxy/ponAbe2/quality_scores