https://github.com/galaxyproject/galaxy
Tip revision: 74eca3c953c6c99c3a5ccdc780c0ea273a5c305e authored by John Chilton on 15 October 2020, 16:15:17 UTC
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Tip revision: 74eca3c
regions.loc.sample
#This is a sample file distributed with Galaxy that is used by some
#ENCODE tools. The regions.loc file has this format (white space
#characters are TAB characters):
#
#<build> <uid> <region_description> <file_path>
#
#So, for example, if you had ENCODE Regions for build hg16 stored in
#/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed, then the
#regions.loc entry would look like this:
#
#hg16 encode_hg16 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed
#
#and your /depot/data2/galaxy/regions/ directory would
#contain all of your regions files (e.g.):
#
#-rw-r--r-- 1 dan g2cache 1367 2006-03-14 13:55 encode_regions_coords_hg16.bed
#-rw-r--r-- 1 dan g2cache 1367 2006-03-14 13:53 encode_regions_coords_hg17.bed
#...etc...
#
#Your regions.loc file should include an entry per line for each region
#file you have stored. For example:
#
#hg16 encode_hg16 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed
#hg17 encode_hg17 ENCODE Regions /depot/data2/galaxy/regions/encode_regions_coords_hg17.bed