https://github.com/galaxyproject/galaxy
Raw File
Tip revision: 74eca3c953c6c99c3a5ccdc780c0ea273a5c305e authored by John Chilton on 15 October 2020, 16:15:17 UTC
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Tip revision: 74eca3c
regions.loc.sample
#This is a sample file distributed with Galaxy that is used by some
#ENCODE tools.  The regions.loc file has this format (white space 
#characters are TAB characters):
#
#<build>	<uid>	<region_description>	<file_path>
#
#So, for example, if you had ENCODE Regions for build hg16 stored in 
#/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed, then the
#regions.loc entry would look like this:
#
#hg16	encode_hg16	ENCODE Regions	/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed
#
#and your /depot/data2/galaxy/regions/ directory would 
#contain all of your regions files (e.g.):
#
#-rw-r--r--   1 dan  g2cache 1367 2006-03-14 13:55 encode_regions_coords_hg16.bed
#-rw-r--r--   1 dan  g2cache 1367 2006-03-14 13:53 encode_regions_coords_hg17.bed
#...etc...
#
#Your regions.loc file should include an entry per line for each region 
#file you have stored.  For example:
#
#hg16	encode_hg16	ENCODE Regions	/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed 
#hg17	encode_hg17	ENCODE Regions	/depot/data2/galaxy/regions/encode_regions_coords_hg17.bed
back to top