https://github.com/galaxyproject/galaxy
Tip revision: 74eca3c953c6c99c3a5ccdc780c0ea273a5c305e authored by John Chilton on 15 October 2020, 16:15:17 UTC
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Version 20.9.0 of web-framework (tag galaxy-web-framework-20.9.0).
Tip revision: 74eca3c
sequence_index_color.loc.sample
#This is a sample file distributed with Galaxy that enables tools
#to use a directory of BWA indexed sequences data files. You will need
#to create these data files and then create a sequence_index_color.loc file
#similar to this one (store it in this directory) that points to
#the directories in which those files are stored. The sequence_index_color.loc
#file has this format (white space characters are TAB characters):
#
#<build> <file_base>
#
#So, for example, if you had phiX indexed stored in
#/depot/data2/galaxy/phiX/color/,
#then the sequence_index_color.loc entry would look like this:
#
#phiX /depot/data2/galaxy/phiX/color/phiX.fa
#
#and your /depot/data2/galaxy/phiX/color/ directory
#would contain phiX.fa.* files:
#
#-rw-r--r-- 1 james universe 830134 2005-09-13 10:12 phiX.fa.amb
#-rw-r--r-- 1 james universe 527388 2005-09-13 10:12 phiX.fa.ann
#-rw-r--r-- 1 james universe 269808 2005-09-13 10:12 phiX.fa.bwt
#...etc...
#
#Your sequence_index_color.loc file should include an entry per line for
#each index set you have stored. The "file" in the path does not actually
#exist, but it is the prefix for the actual index files. For example:
#
#phiX /depot/data2/galaxy/phiX/color/phiX.fa
#hg18 /depot/data2/galaxy/hg18/color/hg18.fa