https://github.com/genome/genome
Tip revision: 7a474d71e65712e5cda11a3fd2aae2e2bc5e10d3 authored by Dave Larson on 29 October 2012, 15:20:44 UTC
changed filtering to be based on chromosome and position only. Should make it more robust to changes to the ends of ids.
changed filtering to be based on chromosome and position only. Should make it more robust to changes to the ends of ids.
Tip revision: 7a474d7
.gitmodules
[submodule "somatic-sniper"]
path = somatic-sniper
url = ssh://git/srv/git/somatic-sniper.git
[submodule "joinx"]
path = joinx
url = ssh://git/srv/git/joinx.git
[submodule "vendor/Net-HTTPServer"]
path = vendor/Net-HTTPServer
url = ssh://git/srv/git/vendor/Net-HTTPServer.git
[submodule "vendor/File-Grep"]
path = vendor/File-Grep
url = ssh://git/srv/git/vendor/File-Grep.git
[submodule "tigra"]
path = tigra
url = ssh://git//srv/git/tigra.git
[submodule "genome-music-testdata"]
path = genome-music-testdata
url = ssh://git//srv/git/genome-music-testdata.git
[submodule "varscan"]
path = varscan
url = ssh://git//srv/git/varscan.git
[submodule "tigra-sv"]
path = tigra-sv
url = ssh://git/srv/git/tigra-sv.git
[submodule "breakdancer"]
path = breakdancer
url = git://github.com/genome/breakdancer.git
[submodule "genome-db-cosmic"]
path = genome-db-cosmic
url = ssh://git//srv/git/genome-db-cosmic.git
[submodule "genome-db-omim"]
path = genome-db-omim
url = ssh://git//srv/git/genome-db-omim.git
[submodule "genome-db-pfam"]
path = genome-db-pfam
url = ssh://git//srv/git/genome-db-pfam.git
[submodule "bam-readcount"]
path = bam-readcount
url = ssh://git//srv/git/bam-readcount.git
[submodule "ur"]
path = ur
url = https://github.com/genome/UR.git
[submodule "workflow"]
path = workflow
url = ssh://git/srv/git/workflow.git
[submodule "jenkins"]
path = jenkins
url = https://github.com/genome/wugc-hudson.git
[submodule "getopt-complete"]
path = getopt-complete
url = https://github.com/genome/Getopt--Complete-for-Perl.git
[submodule "bassovac"]
path = bassovac
url = ssh://git/srv/git/bassovac.git
[submodule "graphite"]
path = graphite
url = https://github.com/genome/graphite.git
[submodule "fqgrep"]
path = fqgrep
url = https://github.com/genome/fqgrep.git
[submodule "sff2fastq"]
path = sff2fastq
url = https://github.com/genome/sff2fastq.git
[submodule "cron"]
path = cron
url = ssh://git/srv/git/genome_cron.git
[submodule "pairoscope"]
path = pairoscope
url = ssh://git//srv/git/pairoscope.git
[submodule "alignment_summary"]
path = alignment_summary
url = ssh://git//srv/git/alignment_summary.git
[submodule "vendor/tophat"]
path = vendor/tophat
url = git@github.com:genome-vendor/tophat.git
[submodule "vendor/libbio-samtools-perl"]
path = vendor/libbio-samtools-perl
url = ssh://git/srv/git/vendor/libbio-samtools-perl
[submodule "vendor/samtools"]
path = vendor/samtools
url = ssh://git/srv/git/vendor/samtools
[submodule "vendor/bwa"]
path = vendor/bwa
url = git://github.com/genome-vendor/bwa.git
[submodule "vendor/apollo"]
path = vendor/apollo
url = git@github.com:genome-vendor/apollo.git
[submodule "vendor/mutalin"]
path = vendor/mutalin
url = git@github.com:genome-vendor/mutalin.git
[submodule "vendor/cufflinks"]
path = vendor/cufflinks
url = git@github.com:genome-vendor/cufflinks.git
[submodule "vendor/velvet"]
path = vendor/velvet
url = git@github.com:genome-vendor/velvet.git
[submodule "vendor/samtools-hybrid"]
path = vendor/samtools-hybrid
url = git@github.com:genome-vendor/samtools-0.1.7a-hybrid.git
[submodule "vendor/bsmap"]
path = vendor/bsmap
url = git@github.com:genome-vendor/bsmap.git
[submodule "vendor/allpathslg"]
path = vendor/allpathslg
url = git@github.com:genome-vendor/allpathslg.git
[submodule "vendor/ensembl"]
path = vendor/ensembl
url = git@github.com:genome-vendor/ensembl.git
[submodule "vendor/CummeRbund"]
path = vendor/CummeRbund
url = git@github.com:genome-vendor/CummeRbund.git
[submodule "tgi-etc"]
path = tgi-etc
url = ssh://git/srv/git/genome-tgi-etc.git
[submodule "vendor/pindel"]
path = vendor/pindel
url = git@github.com:genome-vendor/pindel.git
[submodule "vendor/dendrix"]
path = vendor/dendrix
url = git@github.com:genome-vendor/Dendrix.git
[submodule "vendor/hotnet"]
path = vendor/hotnet
url = git@github.com:genome-vendor/HotNet.git
[submodule "vendor/File-lockf"]
path = vendor/File-lockf
url = http://github.com/genome-vendor/File-Lockf.git
[submodule "vendor/statgen"]
path = vendor/statgen
url = git@github.com:genome-vendor/statgen.git
[submodule "vendor/tophat-fusion"]
path = vendor/tophat-fusion
url = git@github.com:genome-vendor/tophat-fusion.git
[submodule "vendor/MGLtools"]
path = vendor/MGLtools
url = git@github.com:genome-vendor/MGLtools.git
[submodule "vendor/savant"]
path = vendor/savant
url = git://github.com/genome-vendor/savant.git
[submodule "vendor/freebayes"]
path = vendor/freebayes
url = git@github.com:genome-vendor/freebayes.git
[submodule "vendor/FLASH"]
path = vendor/FLASH
url = git@github.com:genome-vendor/FLASH.git
[submodule "vendor/chimerascan"]
path = vendor/chimerascan
url = git@github.com:genome-vendor/chimerascan.git
[submodule "vendor/r-cran-gplots"]
path = vendor/r-cran-gplots
url = git@github.com:genome-vendor/r-cran-gplots.git
[submodule "vendor/r-cran-bitops"]
path = vendor/r-cran-bitops
url = git@github.com:genome-vendor/r-cran-bitops.git
[submodule "vendor/r-cran-catools"]
path = vendor/r-cran-catools
url = git@github.com:genome-vendor/r-cran-catools.git
[submodule "vendor/r-cran-h5r"]
path = vendor/r-cran-h5r
url = git@github.com:genome-vendor/r-cran-h5r.git
[submodule "vendor/r-cran-pbh5"]
path = vendor/r-cran-pbh5
url = git@github.com:genome-vendor/r-cran-pbh5
[submodule "vendor/r-bioc-lumi"]
path = vendor/r-bioc-lumi
url = git@github.com:genome-vendor/r-bioc-lumi.git
[submodule "vendor/r-bioc-biobase"]
path = vendor/r-bioc-biobase
url = git@github.com:genome-vendor/r-bioc-biobase.git
[submodule "genome-snapshot-testdata"]
path = genome-snapshot-testdata
url = ssh://git//srv/git/genome-snapshot-testdata.git
[submodule "vendor/libstatistics-robust-scale-perl"]
path = vendor/libstatistics-robust-scale-perl
url = git@github.com:genome-vendor/libstatistics-robust-scale-perl.git
[submodule "vendor/r-cran-skat"]
path = vendor/r-cran-skat
url = git@github.com:genome-vendor/r-cran-skat.git
[submodule "vendor/bowtie"]
path = vendor/bowtie
url = git@github.com:genome-vendor/bowtie.git
[submodule "vendor/r-cran-ggplot2"]
path = vendor/r-cran-ggplot2
url = git@github.com:genome-vendor/r-cran-ggplot2.git
[submodule "vendor/MetaVelvet"]
path = vendor/MetaVelvet
url = git@github.com:genome-vendor/MetaVelvet.git
[submodule "vendor/Statistics-TTest"]
path = vendor/Statistics-TTest
url = git@github.com:genome-vendor/Statistics-TTest.git
[submodule "vendor/bedtools"]
path = vendor/bedtools
url = git@github.com:genome-vendor/bedtools.git
[submodule "genome-snapshot-deps"]
path = genome-snapshot-deps
url = ssh://git/srv/git/genome-snapshot-deps.git
[submodule "vendor/polymutt"]
path = vendor/polymutt
url = git@github.com:genome-vendor/polymutt.git
[submodule "vendor/trinity"]
path = vendor/trinity
url = git@github.com:genome-vendor/trinity.git
[submodule "vendor/r-cran-rcurl"]
path = vendor/r-cran-rcurl
url = git@github.com:genome-vendor/r-cran-rcurl.git
[submodule "vendor/r-cran-chemminer"]
path = vendor/r-cran-chemminer
url = git@github.com:genome-vendor/r-cran-chemminer.git
[submodule "vendor/far"]
path = vendor/far
url = git@github.com:genome-vendor/far.git
[submodule "vendor/r-cran-fastcluster"]
path = vendor/r-cran-fastcluster
url = git@github.com:genome-vendor/r-cran-fastcluster.git
[submodule "vendor/r-cran-plyr"]
path = vendor/r-cran-plyr
url = git@github.com:genome-vendor/r-cran-plyr.git
[submodule "vendor/r-cran-reshape"]
path = vendor/r-cran-reshape
url = git@github.com:genome-vendor/r-cran-reshape.git
[submodule "vendor/r-cran-reshape2"]
path = vendor/r-cran-reshape2
url = git@github.com:genome-vendor/r-cran-reshape2.git
[submodule "vendor/r-cran-rsqlite"]
path = vendor/r-cran-rsqlite
url = git@github.com:genome-vendor/r-cran-rsqlite.git
[submodule "vendor/r-cran-stringr"]
path = vendor/r-cran-stringr
url = git@github.com:genome-vendor/r-cran-stringr.git