https://github.com/genome/genome
Raw File
Tip revision: 86e2b0a4f27f306e75f00da0358a8012b363b2c1 authored by Thomas B. Mooney on 13 January 2016, 21:13:25 UTC
Merge pull request #1207 from tmooney/bam_to_cna_declares_params
Tip revision: 86e2b0a
rebuild-meta-db
#!/bin/bash
set -o errexit

echo "Creating SQLite DBs:"
for DB_TXT in $(find $WORKSPACE -iname '*sqlite3-dump' -or -iname '*sqlite3n-dump'); do
    DB_BIN=${DB_TXT/-dump/}
    rm -f "$DB_BIN"
    sqlite3 "$DB_BIN" < "$DB_TXT"
    echo -e "\t${DB_BIN/$WORKSPACE\//}"
done
echo "Done creating SQLite DBs."
back to top