https://github.com/genome/genome
Tip revision: e8af555b84e62d224c30cf56a017c006500ec472 authored by Thomas B. Mooney on 26 January 2016, 23:05:39 UTC
Merge pull request #1218 from tmooney/submitting_ptero_build_preserves_environment
Merge pull request #1218 from tmooney/submitting_ptero_build_preserves_environment
Tip revision: e8af555
imp.gsc.wustl.edu-ssl.conf
<VirtualHost *:80>
ServerName imp.gsc.wustl.edu
ServerAlias imp
RewriteEngine On
RewriteCond %{REQUEST_URI} !^/server-status
RewriteRule /(.*) https://imp.gsc.wustl.edu/$1 [R=permanent,L]
</VirtualHost>
<IfModule mod_ssl.c>
##
## SSL Virtual Host Context
##
<VirtualHost *:443>
ServerAdmin webmaster@gsc.wustl.edu
ServerName imp.gsc.wustl.edu
ServerAlias imp
# SuexecUserGroup: Sets the domain to run as a specific user when
# executing processes.
# SuexecUserGroup USER GROUP
Include /opt/shibboleth-sp/etc/shibboleth/apache22.config
<Location />
Allow from all
AuthType shibboleth
ShibRequireSession On
Require valid-user
</Location>
<Location />
Order allow,deny
Allow from 10.0.24.51
Allow from 10.0.28.107
AuthType shibboleth
ShibRequireSession On
Require valid-user
Satisfy Any
</Location>
<Location /static>
Allow from all
Satisfy Any
</Location>
# DocumentRoot: The directory out of which you will serve your
# documents. By default, all requests are taken from this directory, but
# symbolic links and aliases may be used to point to other locations.
DocumentRoot /var/www/domains/gsc.wustl.edu/imp/htdocs
Alias /resources /gsc/scripts/opt/genome/current/web/lib/perl/Genome/View/Resource/Html/old
Alias /var/ /gsc/var/
<Directory /gsc/var>
Options Indexes MultiViews FollowSymLinks
Order deny,allow
Deny from all
Allow from 10
</Directory>
# if not specified, the global error log is used
# If logging to standard access and error logs comment the cronlog line and uncomment below
#ErrorLog /var/www/domains/gsc.wustl.edu/imp/logs/error_log
#CustomLog /var/www/domains/gsc.wustl.edu/imp/logs/access_log combined
# Default logging is now Cronolog, please make sure cronolog is installed before restarting Apache.
ErrorLog "|/usr/bin/cronolog -l /var/www/domains/gsc.wustl.edu/imp/logs/error_log /var/www/domains/gsc.wustl.edu/imp/logs/%Y/%Y-%m-error_log"
CustomLog "|/usr/bin/cronolog -l /var/www/domains/gsc.wustl.edu/imp/logs/access_log /var/www/domains/gsc.wustl.edu/imp/logs/%Y/%Y-%m-access_log" combined
# Do not lose time with IP address lookups
HostnameLookups Off
# Needed for named virtual hosts
UseCanonicalName Off
# Configures the footer on server-generated documents
ServerSignature Off
ScriptAlias /cgi-bin "/var/www/domains/gsc.wustl.edu/imp/cgi-bin"
# ScriptAlias /view/ "/gsc/scripts/lib/perl/Genome/Model/Command/Services/WebApp/Main.psgi/view/"
# ScriptAlias /search "/var/www/domains/gsc.wustl.edu/imp/cgi-bin/search/index.cgi"
# ScriptAlias /res/ "/gsc/scripts/lib/perl/Genome/Model/Command/Services/WebApp/Main.psgi/res/"
# Alias /res "/gsc/scripts/opt/genome-webapp/lib/perl/Genome/View/Resource/Html/"
# Alias /view/genome/resource.html "/gsc/scripts/opt/genome-webapp/lib/perl/Genome/View/Resource/Html/"
Alias /res "/gsc/scripts/opt/genome/current/web/lib/perl/Genome/View/Resource/Html/"
Alias /view/genome/resource.html "/gsc/scripts/opt/genome/current/web/lib/perl/Genome/View/Resource/Html/"
FastCgiExternalServer /tmp/genome.fcgi -host apipe.gsc.wustl.edu:3060 -idle-timeout 600
# Alias /view /tmp/genome.fcgi/view
# Alias /viewajax /tmp/genome.fcgi/viewajax
## to disable view memcache, comment out these 3 lines and uncomment the above two
Alias /cachetrigger /tmp/genome.fcgi/cachetrigger
Alias /viewajax /tmp/genome.fcgi/cachefill
Alias /view /tmp/genome.fcgi/cache
RewriteEngine On
RewriteRule ^/search/$ /search [PT]
Alias /search /tmp/genome.fcgi/view/genome/search/status.html
RewriteCond %{HTTP_USER_AGENT} ^curl.*
RewriteRule ^/cachetrigger.*$ - [F]
# FastCgiExternalServer /tmp/myapp.fcgi -host localhost:3010 -idle-timeout 3600
# Alias / /tmp/myapp.fcgi/
FastCgiExternalServer /tmp/myapp.fcgi -host lims-fcgi.gsc.wustl.edu:3010 -idle-timeout 3600
Alias / /tmp/myapp.fcgi/
<Directory "/var/www/domains/gsc.wustl.edu/imp/cgi-bin">
AllowOverride None
Options ExecCGI -MultiViews +SymLinksIfOwnerMatch
Order allow,deny
Allow from all
</Directory>
<Directory /var/www/domains/gsc.wustl.edu/imp/htdocs>
Options -Indexes ExecCGI FollowSymLinks
AllowOverride All
</Directory>
# SSL Engine Switch:
# Enable/Disable SSL for this virtual host.
SSLEngine on
# SSL Cipher Suite:
# List the ciphers that the client is permitted to negotiate.
# See the mod_ssl documentation for a complete list.
# to display accepted from a shell use: openssl ciphers -v 'HIGH:+MEDIUM'
#SSLCipherSuite ALL:!ADH:!EXPORT56:RC4+RSA:+HIGH:+MEDIUM:+LOW:+SSLv2:+EXP:+eNULL
SSLCipherSuite HIGH:+MEDIUM
# Server Certificate:
# Point SSLCertificateFile at a PEM encoded certificate. If
# the certificate is encrypted, then you will be prompted for a
# pass phrase. Note that a kill -HUP will prompt again. Keep
# in mind that if you have both an RSA and a DSA certificate you
# can configure both in parallel (to also allow the use of DSA
# ciphers, etc.)
#SSLCertificateFile /etc/httpd/conf/ssl.crt/server.crt
#SSLCertificateFile /etc/httpd/conf/ssl.crt/server-dsa.crt
SSLCertificateFile /var/www/domains/gsc.wustl.edu/imp/ssl/imp.gsc.wustl.edu.crt
# Server Private Key:
# If the key is not combined with the certificate, use this
# directive to point at the key file. Keep in mind that if
# you've both a RSA and a DSA private key you can configure
# both in parallel (to also allow the use of DSA ciphers, etc.)
#SSLCertificateKeyFile /etc/httpd/conf/ssl.key/server.key
#SSLCertificateKeyFile /etc/httpd/conf/ssl.key/server-dsa.key
SSLCertificateKeyFile /var/www/domains/gsc.wustl.edu/imp/ssl/imp.gsc.wustl.edu.key
# Server Certificate Chain:
# Point SSLCertificateChainFile at a file containing the
# concatenation of PEM encoded CA certificates which form the
# certificate chain for the server certificate. Alternatively
# the referenced file can be the same as SSLCertificateFile
# when the CA certificates are directly appended to the server
# certificate for convinience.
#SSLCertificateFile /etc/httpd/conf/ssl.crt/ca.crt
# Certificate Authority (CA):
# Set the CA certificate verification path where to find CA
# certificates for client authentication or alternatively one
# huge file containing all of them (file must be PEM encoded)
# Note: Inside SSLCACertificatePath you need hash symlinks
# to point to the certificate files. Use the provided
# Makefile to update the hash symlinks after changes.
#SSLCACertificatePath /etc/httpd/conf/ssl.crt
#SSLCACertificateFile /etc/httpd/conf/ssl.crt/ca-bundle.crt
# Certificate Revocation Lists (CRL):
# Set the CA revocation path where to find CA CRLs for client
# authentication or alternatively one huge file containing all
# of them (file must be PEM encoded)
# Note: Inside SSLCARevocationPath you need hash symlinks
# to point to the certificate files. Use the provided
# Makefile to update the hash symlinks after changes.
#SSLCARevocationPath /etc/httpd/conf/ssl.crl
#SSLCARevocationFile /etc/httpd/conf/ssl.crl/ca-bundle.crl
# Client Authentication (Type):
# Client certificate verification type and depth. Types are
# none, optional, require and optional_no_ca. Depth is a
# number which specifies how deeply to verify the certificate
# issuer chain before deciding the certificate is not valid.
#SSLVerifyClient require
#SSLVerifyDepth 10
# Access Control:
# With SSLRequire you can do per-directory access control based
# on arbitrary complex boolean expressions containing server
# variable checks and other lookup directives. The syntax is a
# mixture between C and Perl. See the mod_ssl documentation
# for more details.
#<Location />
#SSLRequire ( %{SSL_CIPHER} !~ m/^(EXP|NULL)/ \
# and %{SSL_CLIENT_S_DN_O} eq "Snake Oil, Ltd." \
# and %{SSL_CLIENT_S_DN_OU} in {"Staff", "CA", "Dev"} \
# and %{TIME_WDAY} >= 1 and %{TIME_WDAY} <= 5 \
# and %{TIME_HOUR} >= 8 and %{TIME_HOUR} <= 20 ) \
# or %{REMOTE_ADDR} =~ m/^192\.76\.162\.[0-9]+$/
#</Location>
# SSL Engine Options:
# Set various options for the SSL engine.
# o FakeBasicAuth:
# Translate the client X.509 into a Basic Authorisation. This means that
# the standard Auth/DBMAuth methods can be used for access control. The
# user name is the `one line' version of the client's X.509 certificate.
# Note that no password is obtained from the user. Every entry in the user
# file needs this password: `xxj31ZMTZzkVA'.
# o ExportCertData:
# This exports two additional environment variables: SSL_CLIENT_CERT and
# SSL_SERVER_CERT. These contain the PEM-encoded certificates of the
# server (always existing) and the client (only existing when client
# authentication is used). This can be used to import the certificates
# into CGI scripts.
# o StdEnvVars:
# This exports the standard SSL/TLS related `SSL_*' environment variables.
# Per default this exportation is switched off for performance reasons,
# because the extraction step is an expensive operation and is usually
# useless for serving static content. So one usually enables the
# exportation for CGI and SSI requests only.
# o CompatEnvVars:
# This exports obsolete environment variables for backward compatibility
# to Apache-SSL 1.x, mod_ssl 2.0.x, Sioux 1.0 and Stronghold 2.x. Use this
# to provide compatibility to existing CGI scripts.
# o StrictRequire:
# This denies access when "SSLRequireSSL" or "SSLRequire" applied even
# under a "Satisfy any" situation, i.e. when it applies access is denied
# and no other module can change it.
# o OptRenegotiate:
# This enables optimized SSL connection renegotiation handling when SSL
# directives are used in per-directory context.
#SSLOptions +FakeBasicAuth +ExportCertData +CompatEnvVars +StrictRequire
#<Files ~ "\.(cgi|shtml|phtml|php3?)$">
# SSLOptions +StdEnvVars
#</Files>
#<Directory "/srv/www/cgi-bin">
# SSLOptions +StdEnvVars
#</Directory>
# SSL Protocol Adjustments:
# The safe and default but still SSL/TLS standard compliant shutdown
# approach is that mod_ssl sends the close notify alert but doesn't wait for
# the close notify alert from client. When you need a different shutdown
# approach you can use one of the following variables:
# o ssl-unclean-shutdown:
# This forces an unclean shutdown when the connection is closed, i.e. no
# SSL close notify alert is send or allowed to received. This violates
# the SSL/TLS standard but is needed for some brain-dead browsers. Use
# this when you receive I/O errors because of the standard approach where
# mod_ssl sends the close notify alert.
# o ssl-accurate-shutdown:
# This forces an accurate shutdown when the connection is closed, i.e. a
# SSL close notify alert is send and mod_ssl waits for the close notify
# alert of the client. This is 100% SSL/TLS standard compliant, but in
# practice often causes hanging connections with brain-dead browsers. Use
# this only for browsers where you know that their SSL implementation
# works correctly.
# Notice: Most problems of broken clients are also related to the HTTP
# keep-alive facility, so you usually additionally want to disable
# keep-alive for those clients, too. Use variable "nokeepalive" for this.
# Similarly, one has to force some clients to use HTTP/1.0 to workaround
# their broken HTTP/1.1 implementation. Use variables "downgrade-1.0" and
# "force-response-1.0" for this.
SetEnvIf User-Agent ".*MSIE.*" \
nokeepalive ssl-unclean-shutdown \
downgrade-1.0 force-response-1.0
# Per-Server Logging:
# The home of a custom SSL log file. Use this when you want a
# compact non-error SSL logfile on a virtual host basis.
CustomLog /var/www/domains/gsc.wustl.edu/imp/logs/ssl_request_log ssl_combined
</VirtualHost>
</IfModule>