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@Article{AKP+10,
  author        = {Albrethsen, Jakob and Knol, Jaco C. and Piersma, Sander R. and Pham, Thang V. and de Wit, Meike and Mongera, Sandra and Carvalho, Beatriz and Verheul, Henk M. W. and Fijneman, Remond J. A. and Meijer, Gerrit A. and Jimenez, Connie R.},
  journal       = {Molecular \& Cellular Proteomics},
  title         = {{S}ubnuclear proteomics in colorectal cancer: {I}dentification of proteins enriched in the nuclear matrix fraction and regulation in adenoma to carcinoma progression},
  year          = {2010},
  volume        = {9},
  number        = {5},
  pages         = {988--1005},
  doi           = {10.1074/mcp.M900546-MCP200},
}

@Article{BPV+11,
  author        = {Besson, Damien and Pavageau, Aude-H\'el\`ene and Valo, Isabelle and Bourreau, Anthony and B\'elanger, Audrey and Eymerit-Morin, Caroline and Mouli\`ere, Alice and Chassevent, Agn\`es and Boisdron-Celle, Michelle and Morel, Alain and Solassol, Jer\^ome and Campone, Mario and Gamelin, Erick and Barr\'e, Benjamin and Coqueret, Olivier and Guette, Catherine},
  journal       = {Molecular \& Cellular Proteomics},
  title         = {{A} quantitative proteomic approach of the different stages of colorectal cancer establishes {OLFM}4 as a new nonmetastatic tumor marker},
  year          = {2011},
  volume        = {10},
  number        = {12},
  pages         = {M111.009712},
  doi           = {10.1074/mcp.M111.009712},
}

@Article{BSA+15,
  author        = {Bousquet, Paula A. and Sandvik, Joe Alexander and Arntzen, Magnus {\O}. and Jeppesen Edin, Nina F. and Christoffersen, Stine and Krengel, Ute and Pettersen, Erik O. and Thiede, Bernd},
  journal       = {International Journal of Proteomics},
  title         = {{H}ypoxia strongly affects mitochondrial ribosomal proteins and translocases, as shown by quantitative proteomics of {H}e{L}a cells},
  year          = {2015},
  volume        = {2015},
  pages         = {678527},
  doi           = {10.1155/2015/678527},
}

@Article{HXS+06,
  author        = {Han, Yu-Hui and Xia, Li and Song, Li-Ping and Zheng, Ying and Chen, Wen-Li and Zhang, Lei and Huang, Ying and Chen, Guo-Qiang and Wang, Li-Shun},
  journal       = {Proteomics},
  title         = {{C}omparative proteomic analysis of hypoxia-treated and untreated human leukemic {U}937 cells},
  year          = {2006},
  volume        = {6},
  number        = {11},
  pages         = {3262--3274},
  doi           = {10.1002/pmic.200500754},
  issn          = {1615-9861},
  publisher     = {WILEY-VCH Verlag},
}

@Article{JCF+11,
  author        = {Jankova, Lucy and Chan, Charles and Fung, Caroline L. S. and Song, Xiaomin and Kwun, Sun Y. and Cowley, Mark J. and Kaplan, Warren and Dent, Owen F. and Bokey, Elie L. and Chapuis, Pierre H. and Baker, Mark S. and Robertson, Graham R. and Clarke, Stephen J. and Molloy, Mark P.},
  journal       = {Molecular Biosystems},
  title         = {{P}roteomic comparison of colorectal tumours and non-neoplastic mucosa from paired patient samples using i{TRAQ} mass spectrometry},
  year          = {2011},
  volume        = {7},
  number        = {11},
  pages         = {2997--3005},
  doi           = {10.1039/C1MB05236E},
  issue         = {11},
  publisher     = {The Royal Society of Chemistry},
}

@Article{JKMF10,
  author        = {Jimenez, Connie R. and Knol, Jaco C. and Meijer, Gerrit A. and Fijneman, Remond J. A.},
  journal       = {Journal of Proteomics},
  title         = {{P}roteomics of colorectal cancer: {O}verview of discovery studies and identification of commonly identified cancer-associated proteins and candidate {CRC} serum markers},
  year          = {2010},
  volume        = {73},
  number        = {10},
  pages         = {1873--1895},
  doi           = {10.1016/j.jprot.2010.06.004},
  issn          = {1874-3919},
}

@Article{KWA+14,
  author        = {Knol, Jaco C. and de Wit, Meike and Albrethsen, Jakob and Piersma, Sander R. and Pham, Thang V. and Mongera, Sandra and Carvalho, Beatriz and Fijneman, Remond J. A. and Meijer, Gerrit A. and Jim\'enez, Connie R.},
  journal       = {Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics},
  title         = {{P}roteomics of differential extraction fractions enriched for chromatin-binding proteins from colon adenoma and carcinoma tissues},
  year          = {2014},
  volume        = {1844},
  number        = {5},
  pages         = {1034--1043},
  doi           = {10.1016/j.bbapap.2013.12.006},
  issn          = {1570-9639},
}

@Article{MVC+12,
  author        = {McMahon, K. M. and Volpato, M. and Chi, H. Y. and Musiwaro, P. and Poterlowicz, K. and Peng, Y. and Scally, A. J. and Patterson, L. H. and Phillips, R. M. and Sutton, C. W.},
  journal       = {Journal of Proteome Research},
  title         = {{C}haracterization of changes in the proteome in different regions of 3{D} multicell tumor spheroids},
  year          = {2012},
  volume        = {11},
  number        = {5},
  pages         = {2863--2875},
  doi           = {10.1021/pr2012472},
  sn            = {1535-3893},
  z8            = {0},
  z9            = {0},
  zb            = {0},
}

@Article{MHG+12,
  author        = {Morrison, Brian J. and Hastie, Marcus L. and Grewal, Yadveer S. and Bruce, Zara C. and Schmidt, Chris and Reynolds, Brent A. and Gorman, Jeffrey J. and Lopez, J. Alejandro},
  journal       = {PLoS ONE},
  title         = {{P}roteomic comparison of {MCF}-7 tumoursphere and monolayer cultures},
  year          = {2012},
  volume        = {7},
  number        = {12},
  pages         = {e52692},
  doi           = {10.1371/journal.pone.0052692},
  sn            = {1932-6203},
  z8            = {0},
  z9            = {0},
  zb            = {0},
}

@Article{RKP+14,
  author        = {Rajcevic, Uros and Knol, Jaco and Piersma, Sander and Bougnaud, Sebastien and Fack, Fred and Sundlisaeter, Eirik and Sondenaa, Karl and Myklebust, Reidar and Pham, Thang and Niclou, Simone and Jimenez, Connie},
  journal       = {Proteome Science},
  title         = {{C}olorectal cancer derived organotypic spheroids maintain essential tissue characteristics but adapt their metabolism in culture},
  year          = {2014},
  volume        = {12},
  number        = {1},
  pages         = {39},
  doi           = {10.1186/1477-5956-12-39},
  issn          = {1477-5956},
  pubmedid      = {25075203},
}

@Article{RHD+13,
  author        = {Ren, Yan and Hao, Piliang and Dutta, Bamaprasad and Cheow, Esther Sok Hwee and Sim, Kae Hwan and Gan, Chee Sian and Lim, Sai Kiang and Sze, Siu Kwan},
  journal       = {Molecular \& Cellular Proteomics},
  title         = {{H}ypoxia modulates {A}431 cellular pathways association to tumor radioresistance and enhanced migration revealed by comprehensive proteomic and functional studies},
  year          = {2013},
  volume        = {12},
  number        = {2},
  pages         = {485-498},
  doi           = {10.1074/mcp.M112.018325},
}

@Article{STK+15,
  author        = {Sethi, Manveen K. and Thaysen-Andersen, Morten and Kim, Hoguen and Park, Cheol Keun and Baker, Mark S. and Packer, Nicolle H. and Paik, Young-Ki and Hancock, William S. and Fanayan, Susan},
  journal       = {Journal of Proteomics},
  title         = {{Q}uantitative proteomic analysis of paired colorectal cancer and non-tumorigenic tissues reveals signature proteins and perturbed pathways involved in {CRC} progression and metastasis},
  year          = {2015},
  volume        = {126},
  pages         = {54--67},
  doi           = {10.1016/j.jprot.2015.05.037},
  issn          = {1874-3919},
}

@Article{UNS+14,
  author        = {Uzozie, Anuli and Nanni, Paolo and Staiano, Teresa and Grossmann, Jonas and Barkow-Oesterreicher, Simon and Shay, Jerry W. and Tiwari, Amit and Buffoli, Federico and Laczko, Endre and Marra, Giancarlo},
  journal       = {Molecular \& Cellular Proteomics},
  title         = {{S}orbitol dehydrogenase overexpression and other aspects of dysregulated protein expression in human precancerous colorectal neoplasms: {A} quantitative proteomics study},
  year          = {2014},
  volume        = {13},
  number        = {5},
  pages         = {1198--1218},
  doi           = {10.1074/mcp.M113.035105},
}

@Article{WDO+15,
  author        = {Wi\'sniewski, Jacek R. and Du\'s-Szachniewicz, Kamila and Ostasiewicz, Pawe{\l} and Zi\'o{\l}kowski, Piotr and Rakus, Dariusz and Mann, Matthias},
  journal       = {Journal of Proteome Research},
  title         = {{A}bsolute proteome analysis of colorectal mucosa, adenoma, and cancer reveals drastic changes in fatty acid metabolism and plasma membrane transporters},
  year          = {2015},
  volume        = {14},
  number        = {9},
  pages         = {4005--4018},
  doi           = {10.1021/acs.jproteome.5b00523},
  publisher     = {American Chemical Society ({ACS})},
}

@Article{WOD+12,
  author        = {Wi\'sniewski, Jacek R. and Ostasiewicz, Pawe{\l} and Du\'s, Kamila and Zieli\'nska, Dorota F. and Gnad, Florian and Mann, Matthias},
  journal       = {Molecular Systems Biology},
  title         = {{E}xtensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma},
  year          = {2012},
  volume        = {8},
  number        = {1},
  pages         = {611},
  doi           = {10.1038/msb.2012.44},
  publisher     = {Wiley-Blackwell},
}

@Article{KKL+12,
  author        = {Kim, Hye-Jung and Kang, Un-Beom and Lee, Hanna and Jung, Ji-Han and Lee, Seung-Taek and Yu, Myeong-Hee and Kim, Hoguen and Lee, Cheolju},
  journal       = {Journal of Proteomics},
  title         = {{P}rofiling of differentially expressed proteins in stage {IV} colorectal cancers with good and poor outcomes},
  year          = {2012},
  volume        = {75},
  number        = {10},
  pages         = {2983--2997},
  doi           = {10.1016/j.jprot.2011.12.002},
  issn          = {1874-3919},
}

@Article{KYK+12,
  author        = {Kang, Un-Beom and Yeom, Jeonghun and Kim, Hye-Jung and Kim, Hoguen and Lee, Cheolju},
  journal       = {Journal of Proteomics},
  title         = {{E}xpression profiling of more than 3500 proteins of {MSS}-type colorectal cancer by stable isotope labeling and mass spectrometry},
  year          = {2012},
  volume        = {75},
  number        = {10},
  pages         = {3050--3062},
  doi           = {10.1016/j.jprot.2011.11.021},
  issn          = {1874-3919},
}

@Article{XZC+10,
  author        = {Xie, Li-Qi and Zhao, Chao and Cai, San-Jun and Xu, Ye and Huang, Li-Yong and Bian, Jia-Shen and Shen, Cheng-Pin and Lu, Hao-Jie and Yang, Peng-Yuan},
  journal       = {Journal of Proteome Research},
  title         = {{N}ovel proteomic strategy reveal combined $\alpha$1 antitrypsin and cathepsin {D} as biomarkers for colorectal cancer early screening},
  year          = {2010},
  volume        = {9},
  number        = {9},
  pages         = {4701--4709},
  doi           = {10.1021/pr100406z},
}

@Article{WKP+14,
  author        = {de Wit, Meike and Kant, Huub and Piersma, Sander R. and Pham, Thang V. and Mongera, Sandra and van Berkel, Maaike P. A. and Boven, Epie and Pontén, Fredrik and Meijer, Gerrit A. and Jimenez, Connie R. and Fijneman, Remond J. A.},
  journal       = {Journal of Proteomics},
  title         = {{C}olorectal cancer candidate biomarkers identified by tissue secretome proteome profiling},
  year          = {2014},
  volume        = {99},
  pages         = {26--39},
  doi           = {10.1016/j.jprot.2014.01.001},
  issn          = {1874-3919},
}

@Article{WLL+13,
  author        = {Wang, Wan-Sheng and Liu, Xiao-Hui and Liu, Ling-Xiao and Lou, Wen-Hui and Jin, Da-Yong and Yang, Peng-Yuan and Wang, Xiao-Lin},
  journal       = {Journal of Proteomics},
  title         = {i{TRAQ}-based quantitative proteomics reveals myoferlin as a novel prognostic predictor in pancreatic adenocarcinoma},
  year          = {2013},
  volume        = {91},
  pages         = {453--465},
  doi           = {10.1016/j.jprot.2013.06.032},
  issn          = {1874-3919},
}

@Article{ZYS+10,
  author        = {Zhang, Yanbin and Ye, Yingjiang and Shen, Danhua and Jiang, Kewei and Zhang, Hui and Sun, Wei and Zhang, Jiyang and Xu, Feng and Cui, Zhirong and Wang, Shan},
  journal       = {Cancer Science},
  title         = {{I}dentification of transgelin-2 as a biomarker of colorectal cancer by laser capture microdissection and quantitative proteome analysis},
  year          = {2010},
  volume        = {101},
  number        = {2},
  pages         = {523--529},
  doi           = {10.1111/j.1349-7006.2009.01424.x},
  issn          = {1349-7006},
  publisher     = {Blackwell Publishing Ltd},
}

@Article{FWH+13,
  author        = {Fuhrmann, Dominik Christian and Wittig, Ilka and Heide, Heinrich and Dehne, Nathalie and Brüne, Bernhard},
  journal       = {Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics},
  title         = {{C}hronic hypoxia alters mitochondrial composition in human macrophages},
  year          = {2013},
  volume        = {1834},
  number        = {12},
  pages         = {2750--2760},
  doi           = {10.1016/j.bbapap.2013.09.023},
  issn          = {1570-9639},
}

@Article{RSE+16,
  author        = {Riis, Simone and Stensballe, Allan and Emmersen, Jeppe and Pennisi, Cristian Pablo and Birkelund, Svend and Zachar, Vladimir and Fink, Trine},
  journal       = {Stem Cell Research \& Therapy},
  title         = {{M}ass spectrometry analysis of adipose-derived stem cells reveals a significant effect of hypoxia on pathways regulating extracellular matrix},
  year          = {2016},
  volume        = {7},
  number        = {1},
  pages         = {1--14},
  doi           = {10.1186/s13287-016-0310-7},
  issn          = {1757-6512},
}

@Article{WRK+14,
  author        = {Wrzesinski, Krzysztof and Rogowska-Wrzesinska, Adelina and Kanlaya, Rattiyaporn and Borkowski, Kamil and Schw\"ammle, Veit and Dai, Jie and Joensen, Kira Eyd and Wojdyla, Katarzyna and Carvalho, Vasco Botelho and Fey, Stephen J.},
  journal       = {PLoS ONE},
  title         = {{T}he cultural divide: {E}xponential growth in classical 2{D} and metabolic equilibrium in 3{D} environments},
  year          = {2014},
  volume        = {9},
  number        = {9},
  pages         = {1-15},
  doi           = {10.1371/journal.pone.0106973},
  publisher     = {Public Library of Science},
}

@Article{MRK+11,
  author        = {Mikula, Michal and Rubel, Tymon and Karczmarski, Jakub and Goryca, Krzysztof and Dadlez, Michal and Ostrowski, Jerzy},
  journal       = {Functional and Integrative Genomics},
  title         = {{I}ntegrating proteomic and transcriptomic high-throughput surveys for search of new biomarkers of colon tumors},
  year          = {2011},
  volume        = {11},
  number        = {2},
  pages         = {215--224},
  doi           = {10.1007/s10142-010-0200-5},
  issn          = {1438-7948},
}

@Article{WTK+08,
  author        = {Watanabe, Makoto and Takemasa, Ichiro and Kawaguchi, Naomasa and Miyake, Masakazu and Nishimura, Noriko and Matsubara, Toshiya and Matsuo, Ei-ichi and Sekimoto, Mitsugu and Nagai, Katsuya and Matsuura, Nariaki and Monden, Morito and Nishimura, Osamu},
  journal       = {Proteomics: Clinical Applications},
  title         = {{A}n application of the 2-nitrobenzenesulfenyl method to proteomic profiling of human colorectal carcinoma: {A} novel approach for biomarker discovery},
  year          = {2008},
  volume        = {2},
  number        = {6},
  pages         = {925--935},
  doi           = {10.1002/prca.200780111},
  issn          = {1862-8354},
  publisher     = {WILEY-VCH Verlag},
}

@Article{YLZ+12,
  author        = {Yao, Ling and Lao, Weifeng and Zhang, Yan and Tang, Xiaorong and Hu, Xiaotong and He, Chao and Hu, Xiaofang and Xu, Lisa X.},
  journal       = {Journal of Proteome Research},
  title         = {{I}dentification of {EFEMP}2 as a serum biomarker for the early detection of colorectal cancer with lectin affinity capture assisted secretome analysis of cultured fresh tissues},
  year          = {2012},
  volume        = {11},
  number        = {6},
  pages         = {3281--3294},
  doi           = {10.1021/pr300020p},
}

@Article{BMJ+11,
  author        = {van den Beucken, Twan and Magagnin, Michael G. and Jutten, Barry and Seigneuric, Renaud and Lambin, Philippe and Koritzinsky, Marianne and Wouters, Bradly G.},
  journal       = {Radiotherapy and Oncology},
  title         = {{T}ranslational control is a major contributor to hypoxia induced gene expression},
  year          = {2011},
  volume        = {99},
  number        = {3},
  pages         = {379--384},
  doi           = {10.1016/j.radonc.2011.05.058},
  issn          = {0167-8140},
}

@Article{LCS16,
  author        = {Lai, Ming-Chih and Chang, Chiao-May and Sun, H. Sunny},
  journal       = {PLoS ONE},
  title         = {{H}ypoxia induces autophagy through translational up-regulation of lysosomal proteins in human colon cancer cells},
  year          = {2016},
  volume        = {11},
  number        = {4},
  pages         = {1-21},
  doi           = {10.1371/journal.pone.0153627},
  publisher     = {Public Library of Science},
}

@Article{HWA+16,
  author        = {Ho, J. J. David and Wang, Miling and Audas, Timothy E. and Kwon, Deukwoo and Carlsson, Steven K. and Timpano, Sara and Evagelou, Sonia L. and Brothers, Shaun and Gonzalgo, Mark L. and Krieger, Jonathan R. and Chen, Steven and Uniacke, James and Lee, Stephen},
  journal       = {Cell Reports},
  title         = {{S}ystemic reprogramming of translation efficiencies on oxygen stimulus},
  year          = {2016},
  volume        = {14},
  number        = {6},
  pages         = {1293--1300},
  doi           = {10.1016/j.celrep.2016.01.036},
  issn          = {2211-1247},
}

@Article{PHL+16,
  author        = {Peng, Fang and Huang, Ying and Li, Mao-Yu and Li, Guo-Qing and Huang, Hui-Chao and Guan, Rui and Chen, Zhu-Chu and Liang, Song-Ping and Chen, Yong-Heng},
  journal       = {World Journal of Gastroenterology},
  title         = {{D}issecting characteristics and dynamics of differentially expressed proteins during multistage carcinogenesis of human colorectal cancer},
  year          = {2016},
  volume        = {22},
  number        = {18},
  pages         = {4515--4528},
  doi           = {10.3748/wjg.v22.i18.4515},
  publisher     = {Baishideng Publishing Group Co., Limited (formerly {WJG} Press)},
}

@Article{LPL+16,
  author    = {Li, Maoyu and Peng, Fang and Li, Guoqing and Fu, Yang and Huang, Ying and Chen, Zhuchu and Chen, Yongheng},
  journal   = {Oncotarget},
  title     = {{P}roteomic analysis of stromal proteins in different stages of colorectal cancer establishes {T}enascin-{C} as a stromal biomarker for colorectal cancer metastasis},
  year      = {2016},
  volume    = {7},
  number    = {24},
  pages     = {37226--37237},
  doi       = {10.18632/oncotarget.9362},
  issn      = {1949-2553},
}

@Article{LXM+16,
  author    = {Liu, Xing and Xu, Yanli and Meng, Qian and Zheng, Qingqing and Wu, Jianhong and Wang, Chen and Jia, Weiping and Figeys, Daniel and Chang, Ying and Zhou, Hu},
  journal   = {Biochemical and Biophysical Research Communications},
  title     = {{P}roteomic analysis of minute amount of colonic biopsies by enteroscopy sampling},
  year      = {2016},
  volume    = {476},
  number    = {4},
  pages     = {286--292},
  doi       = {10.1016/j.bbrc.2016.05.114},
  issn      = {0006-291X},
}

@Article{MCZ+13,
  author    = {Mu, Yibing and Chen, Yongheng and Zhang, Guiying and Zhan, Xianquan and Li, Yuanyuan and Liu, Ting and Li, Guoqing and Li, Maoyu and Xiao, Zhefeng and Gong, Xiaoxiang and Chen, Zhuchu},
  journal   = {Electrophoresis},
  title     = {{I}dentification of stromal differentially expressed proteins in the colon carcinoma by quantitative proteomics},
  year      = {2013},
  volume    = {34},
  number    = {11},
  pages     = {1679--1692},
  doi       = {10.1002/elps.201200596},
  publisher = {Wiley-Blackwell},
}

@Article{KKC+16,
  author        = {Kuo, Kung-Kai and Kuo, Chao-Jen and Chiu, Chiang-Yen and Liang, Shih-Shin and Huang, Chun-Hao and Chi, Shu-Wen and Tsai, Kun-Bow and Chen, Chiao-Yun and Hsi, Edward and Cheng, Kuang-Hung and Chiou, Shyh-Horng},
  journal       = {Pancreas},
  title         = {{Q}uantitative proteomic analysis of differentially expressed protein profiles involved in pancreatic ductal adenocarcinoma},
  year          = {2016},
  volume        = {45},
  number        = {1},
  pages         = {71--83},
  doi           = {10.1097/MPA.0000000000000388},
}

@Article{CBW+11,
  author        = {Cifani, Paolo and Bendz, Maria and Wårell, Kristofer and Hansson, Karin and Levander, Fredrik and Sandin, Marianne and Krogh, Morten and Ovenberger, Marie and Fredlund, Erik and Vaapil, Marica and Pietras, Alexander and Påhlman, Sven and James, Peter},
  journal       = {Journal of Proteome Research},
  title         = {{H}unting for protein markers of hypoxia by combining plasma membrane enrichment with a new approach to membrane protein analysis},
  year          = {2011},
  volume        = {10},
  number        = {4},
  pages         = {1645-1656},
  doi           = {10.1021/pr100982j},
}

@Article{DPL+10,
  author        = {Datta, Arnab and Park, Jung Eun and Li, Xin and Zhang, Huoming and Ho, Zhi Shan and Heese, Klaus and Lim, Sai Kiang and Tam, James P. and Sze, Siu Kwan},
  journal       = {Journal of Proteome Research},
  title         = {{P}henotyping of an \emph{in vitro} model of ischemic penumbra by i{TRAQ}-based shotgun quantitative proteomics},
  year          = {2010},
  volume        = {9},
  number        = {1},
  pages         = {472-484},
  doi           = {10.1021/pr900829h},
}

@Article{LAR+12,
  author        = {Li, Xin and Arslan, Fatih and Ren, Yan and Adav, Sunil S. and Poh, Kian Keong and Sorokin, Vitaly and Lee, Chuen Neng and de Kleijn, Dominique and Lim, Sai Kiang and Sze, Siu Kwan},
  journal       = {Journal of Proteome Research},
  title         = {{M}etabolic adaptation to a disruption in oxygen supply during myocardial ischemia and reperfusion is underpinned by temporal and quantitative changes in the cardiac proteome},
  year          = {2012},
  volume        = {11},
  number        = {4},
  pages         = {2331-2346},
  doi           = {10.1021/pr201025m},
}

@Article{VTMF13,
  author        = {Villeneuve, Lance and Tiede, LeAnn M. and Morsey, Brenda and Fox, Howard S.},
  journal       = {Journal of Proteome Research},
  title         = {{Q}uantitative proteomics reveals oxygen-dependent changes in neuronal mitochondria affecting function and sensitivity to rotenone},
  year          = {2013},
  volume        = {12},
  number        = {10},
  pages         = {4599-4606},
  doi           = {10.1021/pr400758d},
}

@Article{DYL+14,
  author        = {Dutta, Bamaprasad and Yan, Ren and Lim, Sai Kiang and Tam, James P. and Sze, Siu Kwan},
  journal       = {Molecular \& Cellular Proteomics},
  title         = {{Q}uantitative profiling of chromatome dynamics reveals a novel role for {HP}1{BP}3 in hypoxia-induced oncogenesis},
  year          = {2014},
  volume        = {13},
  number        = {12},
  pages         = {3236-3249},
  doi           = {10.1074/mcp.M114.038232},
}

@Article{BRA+10,
  author        = {Blankley, Richard T. and Robinson, Nicola J. and Aplin, John D. and Crocker, Ian P. and Gaskell, Simon J. and Whetton, Anthony D. and Baker, Philip N. and Myers, Jenny E.},
  journal       = {Reproductive Sciences},
  title         = {{A} gel-free quantitative proteomics analysis of factors released from hypoxic-conditioned placentae},
  year          = {2010},
  volume        = {17},
  number        = {3},
  pages         = {247-257},
  doi           = {10.1177/1933719109351320},
}

@Article{ISI+14,
  author        = {Iuga, Cristina and Seicean, Andrada and Iancu, Cornel and Buiga, Rareş and Sappa, Praveen K. and Völker, Uwe and Hammer, Elke},
  journal       = {Proteomics},
  title         = {{P}roteomic identification of potential prognostic biomarkers in resectable pancreatic ductal adenocarcinoma},
  year          = {2014},
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  number        = {7-8},
  pages         = {945--955},
  doi           = {10.1002/pmic.201300402},
  issn          = {1615-9861},
}

@Article{MLC+11,
  author        = {McKinney, Kimberly Q. and Lee, Yong-Yook and Choi, Hyun-Su and Groseclose, Gale and Iannitti, David A. and Martinie, John B. and Russo, Mark W. and Lundgren, Deborah H. and Han, David K. and Bonkovsky, Herbert L. and Hwang, Sun-Il},
  journal       = {Journal of Proteomics},
  title         = {{D}iscovery of putative pancreatic cancer biomarkers using subcellular proteomics},
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  volume        = {74},
  number        = {1},
  pages         = {79--88},
  doi           = {10.1016/j.jprot.2010.08.006},
  issn          = {1874-3919},
}

@Article{PCS+11,
  author        = {Pan, Sheng and Chen, Ru and Stevens, Tyler and Bronner, Mary P. and May, Damon and Tamura, Yasuko and McIntosh, Martin W. and Brentnall, Teresa A.},
  journal       = {PLoS ONE},
  title         = {{P}roteomics portrait of archival lesions of chronic pancreatitis},
  year          = {2011},
  volume        = {6},
  number        = {11},
  pages         = {1-12},
  doi           = {10.1371/journal.pone.0027574},
  publisher     = {Public Library of Science},
}

@Article{CTZ+09,
  author        = {Cui, Yazhou and Tian, Mei and Zong, Meijuan and Teng, Mujian and Chen, Yu and Lu, Jun and Jiang, Jinbo and Liu, Xiaoyong and Han, Jinxiang},
  journal       = {Pancreatology},
  title         = {{P}roteomic analysis of pancreatic ductal adenocarcinoma compared with normal adjacent pancreatic tissue and pancreatic benign cystadenoma},
  year          = {2009},
  volume        = {9},
  number        = {1-2},
  pages         = {89--98},
  doi           = {10.1159/000178879},
  issn          = {1424-3903},
}

@Article{CGB+05,
  author        = {Crnogorac-Jurcevic, Tatjana and Gangeswaran, Rathi and Bhakta, Vipul and Capurso, Gabriele and Lattimore, Samuel and Akada, Masanori and Sunamura, Makoto and Prime, Wendy and Campbell, Fiona and Brentnall, Teresa A. and Costello, Eithne and Neoptolemos, John and Lemoine, Nicholas R.},
  journal       = {Gastroenterology},
  title         = {{P}roteomic analysis of chronic pancreatitis and pancreatic adenocarcinoma},
  year          = {2005},
  volume        = {129},
  number        = {5},
  pages         = {1454--1463},
  doi           = {10.1053/j.gastro.2005.08.012},
  issn          = {0016-5085},
}

@Article{KBK+12,
  author        = {Kojima, Kyoko and Bowersock, Gregory J. and Kojima, Chinatsu and Klug, Christopher A. and Grizzle, William E. and Mobley, James A.},
  journal       = {Proteomics},
  title         = {{V}alidation of a robust proteomic analysis carried out on formalin-fixed paraffin-embedded tissues of the pancreas obtained from mouse and human},
  year          = {2012},
  volume        = {12},
  number        = {22},
  pages         = {3393--3402},
  doi           = {10.1002/pmic.201100663},
  issn          = {1615-9861},
}

@Article{KPC+13,
  author        = {Kosanam, Hari and Prassas, Ioannis and Chrystoja, Caitlin C. and Soleas, Ireena and Chan, Alison and Dimitromanolakis, Apostolos and Blasutig, Ivan M. and Rückert, Felix and Gruetzmann, Robert and Pilarsky, Christian and Maekawa, Masato and Brand, Randall and Diamandis, Eleftherios P.},
  journal       = {Molecular \& Cellular Proteomics},
  title         = {{L}aminin, gamma 2 ({LAMC}2): {A} promising new putative pancreatic cancer biomarker identified by proteomic analysis of pancreatic adenocarcinoma tissues},
  year          = {2013},
  volume        = {12},
  number        = {10},
  pages         = {2820-2832},
  doi           = {10.1074/mcp.M112.023507},
}

@Article{ZNWL13,
  author        = {Zhu, Jianhui and Nie, Song and Wu, Jing and Lubman, David M.},
  journal       = {Journal of Proteome Research},
  title         = {{T}arget proteomic profiling of frozen pancreatic {CD}24+ adenocarcinoma tissues by immuno-laser capture microdissection and nano-{LC}–{MS}/{MS}},
  year          = {2013},
  volume        = {12},
  number        = {6},
  pages         = {2791-2804},
  doi           = {10.1021/pr400139c},
}

@Article{PKB+13,
  author    = {Paulo, Joao A. and Kadiyala, Vivek and Brizard, Scott and Banks, Peter A. and Steen, Hanno and Conwell, Darwin L.},
  journal   = {Journal of the Pancreas},
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  year      = {2013},
  volume    = {14},
  number    = {4},
  pages     = {405--414},
  doi       = {10.6092/1590-8577/1508},
  publisher = {JOP. Journal of the Pancreas},
}

@Article{CYD+05,
  author        = {Chen, Ru and Yi, Eugene C. and Donohoe, Samuel and Pan, Sheng and Eng, Jimmy and Cooke, Kelly and Crispin, David A. and Lane, Zhaoli and Goodlett, David R. and Bronner, Mary P. and Aebersold, Ruedi and Brentnall, Teresa A.},
  journal       = {Gastroenterology},
  title         = {{P}ancreatic cancer proteome: {T}he proteins that underlie invasion, metastasis, and immunologic escape},
  year          = {2005},
  volume        = {129},
  number        = {4},
  pages         = {1187--1197},
  booktitle     = {Gastroenterology},
  doi           = {10.1053/j.gastro.2005.08.001},
  issn          = {0016-5085},
  publisher     = {Elsevier},
}

@Article{KHO+13,
  author        = {Kawahara, Takeo and Hotta, Naoe and Ozawa, Yukiko and Kato, Seiichi and Kano, Keiko and Yokoyama, Yukihiro and Nagino, Masato and Takahashi, Takashi and Yanagisawa, Kiyoshi},
  journal       = {PLoS ONE},
  title         = {{Q}uantitative proteomic profiling identifies {DPYSL}3 as pancreatic ductal adenocarcinoma-associated molecule that regulates cell adhesion and migration by stabilization of focal adhesion complex},
  year          = {2013},
  volume        = {8},
  number        = {12},
  pages         = {e79654},
  doi           = {10.1371/journal.pone.0079654},
  publisher     = {Public Library of Science},
}

@Article{TMW+11,
  author        = {Turtoi, Andrei and Musmeci, Davide and Wang, Yinghong and Dumont, Bruno and Somja, Joan and Bevilacqua, Generoso and De Pauw, Edwin and Delvenne, Philippe and Castronovo, Vincent},
  journal       = {Journal of Proteome Research},
  title         = {{I}dentification of novel accessible proteins bearing diagnostic and therapeutic potential in human pancreatic ductal adenocarcinoma},
  year          = {2011},
  volume        = {10},
  number        = {9},
  pages         = {4302-4313},
  doi           = {10.1021/pr200527z},
}

@Article{CBP+07,
  author        = {Chen, Ru and Brentnall, Teresa A. and Pan, Sheng and Cooke, Kelly and Moyes, Kara White and Lane, Zhaoli and Crispin, David A. and Goodlett, David R. and Aebersold, Ruedi and Bronner, Mary P.},
  journal       = {Molecular \& Cellular Proteomics},
  title         = {{Q}uantitative proteomics analysis reveals that proteins differentially expressed in chronic pancreatitis are also frequently involved in pancreatic cancer},
  year          = {2007},
  volume        = {6},
  number        = {8},
  pages         = {1331--1342},
  doi           = {10.1074/mcp.M700072-MCP200},
}

@Article{LHE+04,
  author        = {Lu, ZhaoHui and Hu, LiPing and Evers, Stefan and Chen, Jie and Shen, Yan},
  journal       = {Proteomics},
  title         = {{D}ifferential expression profiling of human pancreatic adenocarcinoma and healthy pancreatic tissue},
  year          = {2004},
  volume        = {4},
  number        = {12},
  pages         = {3975--3988},
  doi           = {10.1002/pmic.200300863},
  issn          = {1615-9861},
  publisher     = {WILEY-VCH Verlag},
}

@Article{KKG+12,
  author    = {Kocharunchitt, Chawalit and King, Thea and Gobius, Kari and Bowman, John P. and Ross, Tom},
  journal   = {Molecular \& Cellular Proteomics},
  title     = {{I}ntegrated transcriptomic and proteomic analysis of the physiological response of \emph{{E}scherichia coli} {O}157:{H}7 {S}akai to steady-state conditions of cold and water activity stress},
  year      = {2012},
  volume    = {11},
  number    = {1},
  pages     = {M111.009019},
  doi       = {10.1074/mcp.M111.009019},
}

@Article{PW08,
  author    = {Pham, Trong Khoa and Wright, Phillip C.},
  journal   = {Journal of Proteome Research},
  title     = {{T}he proteomic response of \emph{{S}accharomyces cerevisiae} in very high glucose conditions with amino acid supplementation},
  year      = {2008},
  volume    = {7},
  number    = {11},
  pages     = {4766--4774},
  af        = {Pham, Trong KhoaEOLEOLWright, Phillip C.},
  doi       = {10.1021/pr800331s},
  sn        = {1535-3893},
}

@Article{YDZ+15,
  author    = {Yang, Li-Bo and Dai, Xiao-Meng and Zheng, Zhi-Yong and Zhu, Li and Zhan, Xiao-Bei and Lin, Chi-Chung},
  journal   = {Journal of Microbiology and Biotechnology},
  title     = {{P}roteomic analysis of erythritol-producing \emph{{Y}arrowia lipolytica} from glycerol in response to osmotic pressure},
  year      = {2015},
  volume    = {25},
  number    = {7},
  pages     = {1056--1069},
  doi       = {10.4014/jmb.1412.12026},
  publisher = {Korean Society for Microbiology and Biotechnology},
}

@Article{GSC14,
  author    = {Giardina, Bennett J. and Stanley, Bruce A. and Chiang, Hui-Ling},
  journal   = {Proteome Science},
  title     = {{G}lucose induces rapid changes in the secretome of \emph{{S}accharomyces cerevisiae}},
  year      = {2014},
  volume    = {12},
  number    = {1},
  pages     = {9},
  doi       = {10.1186/1477-5956-12-9},
  publisher = {Springer Nature},
}

@Article{CCC+12,
  author        = {Chen, You-Hsuan and Chen, Jing-Yi and Chen, Yi-Wen and Lin, Szu-Ting and Chan, Hong-Lin},
  journal       = {Molecular Biosystems},
  title         = {{H}igh glucose-induced proteome alterations in retinal pigmented epithelium cells and its possible relevance to diabetic retinopathy},
  year          = {2012},
  volume        = {8},
  number        = {12},
  pages         = {3107--3124},
  doi           = {10.1039/C2MB25331C},
  issue         = {12},
  publisher     = {The Royal Society of Chemistry},
}

@Article{CCCC13,
  author        = {Jing-Yi Chen and Hsiu-Chuan Chou and You-Hsuan Chen and Hong-Lin Chan},
  journal       = {Journal of Nutritional Biochemistry},
  title         = {{H}igh glucose-induced proteome alterations in hepatocytes and its possible relevance to diabetic liver disease},
  year          = {2013},
  volume        = {24},
  number        = {11},
  pages         = {1889--1910},
  doi           = {10.1016/j.jnutbio.2013.05.006},
  issn          = {0955-2863},
}

@Article{LDB+15,
  author        = {Liu, Zhenke and Dai, Shujia and Bones, Jonathan and Ray, Somak and Cha, Sangwon and Karger, Barry L. and Li, Jingyi Jessica and Wilson, Lee and Hinckle, Greg and Rossomando, Anthony},
  journal       = {Biotechnology Progress},
  title         = {{A} quantitative proteomic analysis of cellular responses to high glucose media in {C}hinese hamster ovary cells},
  year          = {2015},
  volume        = {31},
  number        = {4},
  pages         = {1026--1038},
  doi           = {10.1002/btpr.2090},
  issn          = {1520-6033},
}

@Article{WCM+09,
  author        = {Waanders, Leonie F. and Chwalek, Karolina and Monetti, Mara and Kumar, Chanchal and Lammert, Eckhard and Mann, Matthias},
  journal       = {Proceedings of the National Academy of Sciences},
  title         = {{Q}uantitative proteomic analysis of single pancreatic islets},
  year          = {2009},
  volume        = {106},
  number        = {45},
  pages         = {18902-18907},
  doi           = {10.1073/pnas.0908351106},
}

@Article{OBBH11,
  author        = {Oswald, Elizabeth S. and Brown, Lewis M. and Bulinski, J. Chloë and Hung, Clark T.},
  journal       = {Journal of Proteome Research},
  title         = {{L}abel-free protein profiling of adipose-derived human stem cells under hyperosmotic treatment},
  year          = {2011},
  volume        = {10},
  number        = {7},
  pages         = {3050-3059},
  doi           = {10.1021/pr200030v},
}

@Article{CLG+15,
  author        = {Chen, Liyan and Li, Jing and Guo, Tiannan and Ghosh, Sujoy and Koh, Siew Kwan and Tian, Dechao and Zhang, Liang and Jia, Deyong and Beuerman, Roger W. and Aebersold, Ruedi and Chan, Eric Chun Yong and Zhou, Lei},
  journal       = {Journal of Proteome Research},
  title         = {{G}lobal metabonomic and proteomic analysis of human conjunctival epithelial cells ({IOBA}-{NHC}) in response to hyperosmotic stress},
  year          = {2015},
  volume        = {14},
  number        = {9},
  pages         = {3982-3995},
  doi           = {10.1021/acs.jproteome.5b00443},
}

@Article{KLB+15,
  author        = {Kohler, Christian and Louren\c{c}o, Rog\'erio F. and Bernhardt, J\"org and Albrecht, Dirk and Sch\"uler, Julia and Hecker, Michael and Gomes, Suely L.},
  journal       = {BMC Microbiology},
  title         = {{A} comprehensive genomic, transcriptomic and proteomic analysis of a hyperosmotic stress sensitive $\alpha$-proteobacterium},
  year          = {2015},
  volume        = {15},
  number        = {1},
  pages         = {1--15},
  doi           = {10.1186/s12866-015-0404-x},
  issn          = {1471-2180},
}

@Article{YLW+16,
  author        = {Yue, Xiaoshan and Lukowski, Jessica K. and Weaver, Eric M. and Skube, Susan B. and Hummon, Amanda B.},
  journal       = {Journal of Proteome Research},
  title         = {{Q}uantitative proteomic and phosphoproteomic comparison of 2{D} and 3{D} colon cancer cell culture models},
  year          = {2016},
  volume        = {15},
  number        = {12},
  pages         = {4265--4276},
  doi           = {10.1021/acs.jproteome.6b00342},
}

@Article{WLL+13a,
  author        = {Wan-Sheng Wang and Xiao-Hui Liu and Ling-Xiao Liu and Da-Yong Jin and Peng-Yuan Yang and Xiao-Lin Wang},
  journal       = {Journal of Proteomics},
  title         = {{I}dentification of proteins implicated in the development of pancreatic cancer-associated diabetes mellitus by i{TRAQ}-based quantitative proteomics},
  year          = {2013},
  volume        = {84},
  pages         = {52--60},
  doi           = {10.1016/j.jprot.2013.03.031},
  issn          = {1874-3919},
}

@Article{RBP+16,
  author    = {Leandro Nascimento da Silva Rodrigues and Wesley de Almeida Brito and Ana Flávia Alves Parente and Simone Schneider Weber and Alexandre Melo Bailão and Luciana Casaletti and Clayton Luiz Borges and Célia Maria de Almeida Soares},
  journal   = {Fungal Genetics and Biology},
  title     = {{O}smotic stress adaptation of \emph{{P}aracoccidioides lutzii}, {P}b01, monitored by proteomics},
  year      = {2016},
  volume    = {95},
  pages     = {13--23},
  doi       = {10.1016/j.fgb.2016.08.001},
  issn      = {1087-1845},
}

@Article{TSZ+13,
  author    = {Tse, William Ka Fai and Sun, Jin and Zhang, Huoming and Law, Alice Yu Sheung and Yeung, Bonnie Ho Yee and Chow, Sheung Ching and Qiu, Jian-Wen and Wong, Chris Kong Chu},
  journal   = {Journal of Proteomics},
  title     = {{T}ranscriptomic and i{TRAQ} proteomic approaches reveal novel short-term hyperosmotic stress responsive proteins in the gill of the {J}apanese eel (\emph{{A}nguilla japonica})},
  year      = {2013},
  volume    = {89},
  pages     = {81--94},
  doi       = {10.1016/j.jprot.2013.05.026},
  issn      = {1874-3919},
}

@Article{XCJ+16,
  author    = {Xu, Zhong-Wei and Chen, Xi and Jin, Xiao-Han and Meng, Xiang-Yan and Zhou, Xin and Fan, Feng-Xu and Mao, Shi-Yun and Wang, Yue and Zhang, Wen-Cheng and Shan, Na-Na and Li, Yu-Ming and Xu, Rui-Cheng},
  journal   = {Journal of Proteomics},
  title     = {{SILAC}-based proteomic analysis reveals that salidroside antagonizes cobalt chloride-induced hypoxic effects by restoring the tricarboxylic acid cycle in cardiomyocytes},
  year      = {2016},
  volume    = {130},
  pages     = {211--220},
  doi       = {10.1016/j.jprot.2015.09.028},
  issn      = {1874-3919},
}

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