https://github.com/AdaptivePELE/AdaptivePELE
Tip revision: bb525de7a31c9d3580c8208612c93e219837460c authored by jgilaber on 02 March 2018, 15:41:05 UTC
Merge branch 'master' of /gpfs/projects/bsc72/adaptiveSampling/adaptivePELE
Merge branch 'master' of /gpfs/projects/bsc72/adaptiveSampling/adaptivePELE
Tip revision: bb525de
setup.py
# Run the following line to compile atomset package
# python setup.py build_ext --inplace
import numpy
from setuptools import setup, find_packages
# To use a consistent encoding
from codecs import open
from os import path
from distutils.extension import Extension
try:
from Cython.Build import cythonize
from Cython.Distutils import build_ext
except ImportError:
use_cython = False
else:
use_cython = True
from distutils.command.sdist import sdist as _sdist
class sdist(_sdist):
def run(self):
# Make sure the compiled Cython files in the distribution are
# up-to-date
from Cython.Build import cythonize
cythonize(['cython/mycythonmodule.pyx'])
_sdist.run(self)
cmdclass['sdist'] = sdist
here = path.abspath(path.dirname(__file__))
ext_modules = []
cmdclass = {}
# Get the long description from the README file
with open(path.join(here, 'README.rst'), encoding='utf-8') as f:
long_description = f.read()
if use_cython:
ext_modules += [
Extension("AdaptivePELE.atomset.atomset", ["AdaptivePELE/atomset/atomset.pyx"], include_dirs = ["AdaptivePELE", "AdaptivePELE/atomset"]),
Extension("AdaptivePELE.atomset.SymmetryContactMapEvaluator", ["AdaptivePELE/atomset/SymmetryContactMapEvaluator.pyx"], include_dirs = ["AdaptivePELE","AdaptivePELE/atomset"]),
Extension("AdaptivePELE.atomset.RMSDCalculator", ["AdaptivePELE/atomset/RMSDCalculator.pyx"], include_dirs = ["AdaptivePELE", "AdaptivePELE/atomset"]),
Extension("AdaptivePELE.freeEnergies.utils", ["AdaptivePELE/freeEnergies/utils.pyx"], include_dirs = ["AdaptivePELE", "AdaptivePELE/freeEnergies"])
]
cmdclass.update({ 'build_ext': build_ext })
else:
ext_modules += [
Extension("AdaptivePELE.atomset.atomset", ["AdaptivePELE/atomset/atomset.c"], include_dirs = ["AdaptivePELE", "AdaptivePELE/atomset"]),
Extension("AdaptivePELE.atomset.SymmetryContactMapEvaluator", ["AdaptivePELE/atomset/SymmetryContactMapEvaluator.c"], include_dirs = ["AdaptivePELE","AdaptivePELE/atomset"]),
Extension("AdaptivePELE.atomset.RMSDCalculator", ["AdaptivePELE/atomset/RMSDCalculator.c"], include_dirs = ["AdaptivePELE", "AdaptivePELE/atomset"]),
Extension("AdaptivePELE.freeEnergies.utils", ["AdaptivePELE/freeEnergies/utils.c"], include_dirs = ["AdaptivePELE", "AdaptivePELE/freeEnergies"])
]
setup(
name="AdaptivePELE",
version="1.4",
description='Enhanced sampling of molecular simulations',
long_description=long_description,
url="https://github.com/cescgina/AdaptivePELE",
author='Daniel Lecina, Joan Francesc Gilabert',
author_email='danilecina@gmail.com, cescgina@gmail.com',
license='',
packages=find_packages(exclude=['docs', 'tests']),
package_data={ "AdaptivePELE/atomset": ['*.pxd'] },
install_requires=['numpy'],
cmdclass = cmdclass,
ext_modules = cythonize(ext_modules), # accepts a glob pattern
include_dirs=[numpy.get_include()]
)