https://github.com/haililihai/ATPP_GUI
Tip revision: 7be6a62236399bab8745079e5fa41e799164bca6 authored by haililihai on 20 December 2016, 17:51:06 UTC
Update README.md
Update README.md
Tip revision: 7be6a62
expand_nii_scan.m
% Expand a multiple-scan NIFTI file into multiple single-scan NIFTI files
%
% Usage: expand_nii_scan(multi_scan_filename, [img_idx], [path_to_save])
%
% NIFTI data format can be found on: http://nifti.nimh.nih.gov
%
% - Jimmy Shen (jimmy@rotman-baycrest.on.ca)
%
function expand_nii_scan(filename, img_idx, newpath)
v = version;
% Check file extension. If .gz, unpack it into temp folder
%
if length(filename) > 2 & strcmp(filename(end-2:end), '.gz')
if ~strcmp(filename(end-6:end), '.img.gz') & ...
~strcmp(filename(end-6:end), '.hdr.gz') & ...
~strcmp(filename(end-6:end), '.nii.gz')
error('Please check filename.');
end
if str2num(v(1:3)) < 7.1 | ~usejava('jvm')
error('Please use MATLAB 7.1 (with java) and above, or run gunzip outside MATLAB.');
else
gzFile = 1;
end
end
if ~exist('newpath','var') | isempty(newpath), newpath = pwd; end
if ~exist('img_idx','var') | isempty(img_idx), img_idx = 1:get_nii_frame(filename); end
for i=img_idx
nii_i = load_untouch_nii(filename, i);
fn = [nii_i.fileprefix '_' sprintf('%04d',i)];
pnfn = fullfile(newpath, fn);
if exist('gzFile', 'var')
pnfn = [pnfn '.nii.gz'];
end
save_untouch_nii(nii_i, pnfn);
end
return; % expand_nii_scan