https://github.com/galaxyproject/galaxy
Tip revision: d7cc9889790e444433851dc5ec3b6ea799dd7ab8 authored by mvdbeek on 01 December 2023, 10:54:43 UTC
Create version 23.1.3
Create version 23.1.3
Tip revision: d7cc988
test.sh
#!/bin/bash
set -ex
# Don't display the pip progress bar when running under CI
[ "$CI" = 'true' ] && export PIP_PROGRESS_BAR=off
# Change to packages directory.
cd "$(dirname "$0")"
# Use a throw-away virtualenv
TEST_PYTHON=${TEST_PYTHON:-"python"}
TEST_ENV_DIR=${TEST_ENV_DIR:-$(mktemp -d -t gxpkgtestenvXXXXXX)}
virtualenv -p "$TEST_PYTHON" "$TEST_ENV_DIR"
. "${TEST_ENV_DIR}/bin/activate"
pip install --upgrade pip setuptools wheel
pip install -r../lib/galaxy/dependencies/pinned-typecheck-requirements.txt
# ensure ordered by dependency DAG
while read -r package_dir; do
printf "\n========= TESTING PACKAGE ${package_dir} =========\n\n"
cd "$package_dir"
# Install extras (if needed)
if [ "$package_dir" = "util" ]; then
pip install -e '.[template,jstree]'
elif [ "$package_dir" = "tool_util" ]; then
pip install -e '.[cwl,mulled,edam]'
else
pip install -e '.'
fi
pip install -r test-requirements.txt
# Prevent execution of alembic/env.py at test collection stage (alembic.context not set)
# Also ignore functional tests (galaxy_test/ and tool_shed/test/).
unit_extra='--doctest-modules --ignore=galaxy/model/migrations/alembic/ --ignore=galaxy_test/
--ignore=tool_shed/test/ --ignore=tool_shed/webapp/model/migrations/alembic/'
# Ignore exit code 5 (no tests ran)
pytest $unit_extra -m 'not external_dependency_management' . || test $? -eq 5
make mypy
cd ..
done < packages_by_dep_dag.txt