https://github.com/satijalab/seurat
Tip revision: 49a1be0427f2f26a531eb468ba93eeb18d8a2edb authored by satijalab on 13 December 2019, 20:42:25 UTC
Merge pull request #2416 from satijalab/develop
Merge pull request #2416 from satijalab/develop
Tip revision: 49a1be0
pbmc_small.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{pbmc_small}
\alias{pbmc_small}
\title{A small example version of the PBMC dataset}
\format{A Seurat object with the following slots filled
\describe{
\item{assays}{
\itemize{Currently only contains one assay ("RNA" - scRNA-seq expression data)
\item{counts - Raw expression data}
\item{data - Normalized expression data}
\item{scale.data - Scaled expression data}
\item{var.features - names of the current features selected as variable}
\item{meta.features - Assay level metadata such as mean and variance}
}}
\item{meta.data}{Cell level metadata}
\item{active.assay}{Current default assay}
\item{active.ident}{Current default idents}
\item{graphs}{Neighbor graphs computed, currently stores the SNN}
\item{reductions}{Dimensional reductions: currently PCA and tSNE}
\item{version}{Seurat version used to create the object}
\item{commands}{Command history}
}}
\source{
\url{https://support.10xgenomics.com/single-cell-gene-expression/datasets/1.1.0/pbmc3k}
}
\usage{
pbmc_small
}
\description{
A subsetted version of 10X Genomics' 3k PBMC dataset
}
\keyword{datasets}