https://github.com/sanger-pathogens/gubbins
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Tip revision: f571b771f2604339d795fcfe6a90c6438a085190 authored by Nick Croucher on 01 December 2023, 13:14:37 UTC
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Tip revision: f571b77
block_tab_file.h
/*
 *  Wellcome Trust Sanger Institute
 *  Copyright (C) 2011  Wellcome Trust Sanger Institute
 *  
 *  This program is free software; you can redistribute it and/or
 *  modify it under the terms of the GNU General Public License
 *  as published by the Free Software Foundation; either version 2
 *  of the License, or (at your option) any later version.
 *  
 *  This program is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *  
 *  You should have received a copy of the GNU General Public License
 *  along with this program; if not, write to the Free Software
 *  Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA.
 */

#ifndef _BLOCK_TAB_FILE_H_
#define _BLOCK_TAB_FILE_H_

void print_block_details(FILE * block_file_pointer, int start_coordinate, int end_coordinate, int number_of_snps, char * current_node_id, char * parent_node_id, char * taxon_names,int number_of_child_nodes, double  neg_log_likelihood);
void print_branch_snp_details(FILE * branch_snps_file_pointer, char * current_node_id, char * parent_node_id, int * branches_snp_sites, int number_of_branch_snps, char * branch_snp_sequence, char * branch_snp_ancestor_sequence,char * taxon_names);
#endif
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