https://github.com/satijalab/seurat
Tip revision: 763259d05991d40721dee99c9919ec6d4491d15e authored by Austin Hartman on 05 December 2022, 22:49:37 UTC
Merge pull request #6758 from satijalab/release/4.3.0
Merge pull request #6758 from satijalab/release/4.3.0
Tip revision: 763259d
RunLDA.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/generics.R, R/mixscape.R
\name{RunLDA}
\alias{RunLDA}
\alias{RunLDA.default}
\alias{RunLDA.Assay}
\alias{RunLDA.Seurat}
\title{Run Linear Discriminant Analysis}
\usage{
RunLDA(object, ...)
\method{RunLDA}{default}(
object,
labels,
assay = NULL,
verbose = TRUE,
ndims.print = 1:5,
nfeatures.print = 30,
reduction.key = "LDA_",
seed = 42,
...
)
\method{RunLDA}{Assay}(
object,
assay = NULL,
labels,
features = NULL,
verbose = TRUE,
ndims.print = 1:5,
nfeatures.print = 30,
reduction.key = "LDA_",
seed = 42,
...
)
\method{RunLDA}{Seurat}(
object,
assay = NULL,
labels,
features = NULL,
reduction.name = "lda",
reduction.key = "LDA_",
seed = 42,
verbose = TRUE,
ndims.print = 1:5,
nfeatures.print = 30,
...
)
}
\arguments{
\item{object}{An object of class Seurat.}
\item{...}{Arguments passed to other methods}
\item{labels}{Meta data column with target gene class labels.}
\item{assay}{Assay to use for performing Linear Discriminant Analysis (LDA).}
\item{verbose}{Print the top genes associated with high/low loadings for
the PCs}
\item{ndims.print}{Number of LDA dimensions to print.}
\item{nfeatures.print}{Number of features to print for each LDA component.}
\item{reduction.key}{Reduction key name.}
\item{seed}{Value for random seed}
\item{features}{Features to compute LDA on}
\item{reduction.name}{dimensional reduction name, lda by default}
}
\description{
Run Linear Discriminant Analysis
Function to perform Linear Discriminant Analysis.
}
\concept{mixscape}