https://github.com/ctlab/phantasus
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Tip revision: fc1777a6ebdabf2ea4e225a2337f0d9f9ae151a8 authored by Alexey Sergushichev on 08 April 2021, 15:17:58 UTC
Update .travis.yml
Tip revision: fc1777a
loadFromARCHS4.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{loadFromARCHS4}
\alias{loadFromARCHS4}
\title{Loads expression data from ARCHS4 count files.
Only sapmles with counted expression are kept.
If es already containts expression data it is returned as is.}
\usage{
loadFromARCHS4(es, archs4_files)
}
\arguments{
\item{es}{ExpressionSet from GEO to check for expression in ARCHS4}

\item{archs4_files}{list of available .h5 files from ARCHS4 project}
}
\value{
either original es or an ExpressionSet with loaded count data from ARCHS4
}
\description{
Loads expression data from ARCHS4 count files.
Only sapmles with counted expression are kept.
If es already containts expression data it is returned as is.
}
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