https://github.com/ctlab/phantasus
Tip revision: fc1777a6ebdabf2ea4e225a2337f0d9f9ae151a8 authored by Alexey Sergushichev on 08 April 2021, 15:17:58 UTC
Update .travis.yml
Update .travis.yml
Tip revision: fc1777a
testgseaPlot.R
context("GSEA plot")
library(jsonlite)
library(Biobase)
test_that("gseaPlot works", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
set.seed(42)
fData(es)$t <- rnorm(nrow(es))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = TRUE))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = TRUE,
addHeatmap = TRUE, showAnnotation = "time"))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = FALSE,
addHeatmap = TRUE, showAnnotation = "time"))
expect_true(file.exists(f))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, vertical = FALSE,
addHeatmap = TRUE))
expect_true(file.exists(f))
})
test_that("gseaPlot with heatmap works for single column", {
load(file = system.file("testdata/GSE27112-GPL6103.rda", package="phantasus"))
es <- es[, 1]
set.seed(42)
fData(es)$t <- rnorm(nrow(es))
f <- fromJSON(gseaPlot(es, rankBy = "t", selectedGenes = sample.int(nrow(es), 10),
width=6, height=4, addHeatmap = TRUE))
expect_true(file.exists(f))
})