https://github.com/palash1992/DynamicGEM
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Tip revision: 59fe09dee81b84e706d5daf7dfcfabfad2c3396f authored by Sujit-O on 09 May 2019, 05:11:20 UTC
compiled TIMERS for python 3.6 and matlab runtime v 9.6
Tip revision: 59fe09d
test_dynAERNN.py
import os
import matplotlib.pyplot as plt
from dynamicgem.embedding.dynAERNN     import DynAERNN
from dynamicgem.graph_generation import dynamic_SBM_graph as sbm
from dynamicgem.visualization import plot_dynamic_sbm_embedding
from time import time


def main():
    # Parameters for Stochastic block model graph
    # Todal of 1000 nodes
    node_num = 1000
    # Test with two communities
    community_num = 2
    # At each iteration migrate 10 nodes from one community to the another
    node_change_num = 10
    # Length of total time steps the graph will dynamically change
    length = 7
    # output directory for result
    outdir = './output'
    intr = './intermediate'
    if not os.path.exists(outdir):
        os.mkdir(outdir)
    if not os.path.exists(intr):
        os.mkdir(intr)
    testDataType = 'sbm_cd'
    # Generate the dynamic graph
    dynamic_sbm_series = list(sbm.get_community_diminish_series_v2(node_num,
                                                                   community_num,
                                                                   length,
                                                                   1,  # comminity ID to perturb
                                                                   node_change_num))
    graphs = [g[0] for g in dynamic_sbm_series]
    # parameters for the dynamic embedding
    # dimension of the embedding
    dim_emb = 8
    lookback = 2

    # dynAERNN
    embedding = DynAERNN(d=dim_emb,
                         beta=5,
                         n_prev_graphs=lookback,
                         nu1=1e-6,
                         nu2=1e-6,
                         n_aeunits=[500, 300],
                         n_lstmunits=[500, dim_emb],
                         rho=0.3,
                         n_iter=2,
                         xeta=1e-3,
                         n_batch=100,
                         modelfile=['./intermediate/enc_model_dynAERNN.json',
                                    './intermediate/dec_model_dynAERNN.json'],
                         weightfile=['./intermediate/enc_weights_dynAERNN.hdf5',
                                     './intermediate/dec_weights_dynAERNN.hdf5'],
                         savefilesuffix="testing")

    embs = []
    t1 = time()
    for temp_var in range(lookback + 1, length + 1):
        emb, _ = embedding.learn_embeddings(graphs[:temp_var])
        embs.append(emb)
    print(embedding._method_name + ':\n\tTraining time: %f' % (time() - t1))
    plt.figure()
    plt.clf()
    plot_dynamic_sbm_embedding.plot_dynamic_sbm_embedding_v2(embs[-5:-1], dynamic_sbm_series[-5:])
    plt.show()


if __name__ == '__main__':
    main()
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