https://github.com/cran/bayestestR
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Tip revision: 79b3ea026adbb877bc1921a9cf1ea0eae067cb63 authored by Dominique Makowski on 12 February 2024, 11:40:02 UTC
version 0.13.2
Tip revision: 79b3ea0
test-si.R
test_that("si.numeric", {
  skip_if_not_installed("logspline")

  set.seed(333)
  prior <- distribution_normal(1000, mean = 0, sd = 1)
  posterior <- distribution_normal(1000, mean = 0.5, sd = 0.3)

  expect_warning(
    {
      res <- si(posterior, prior)
    },
    regexp = "40"
  )
  expect_equal(res$CI_low, 0.043, tolerance = 0.02)
  expect_equal(res$CI_high, 1.053103, tolerance = 0.02)
  expect_s3_class(res, "bayestestR_si")

  res <- si(posterior, prior, BF = 3, verbose = FALSE)
  expect_equal(res$CI_low, 0.35, tolerance = 0.02)
  expect_equal(res$CI_high, 0.759, tolerance = 0.02)

  res <- si(posterior, prior, BF = 100, verbose = FALSE)
  expect_true(all(is.na(res$CI_low)))
  expect_true(all(is.na(res$CI_high)))

  res <- si(posterior, prior, BF = c(1 / 3, 1, 3), verbose = FALSE)
  expect_equal(res$CI, c(1 / 3, 1, 3), tolerance = 0.02)
  expect_equal(res$CI_low, c(-0.1277, 0.0426, 0.3549), tolerance = 0.02)
  expect_equal(res$CI_high, c(1.213, 1.053, 0.759), tolerance = 0.02)
})

test_that("si.rstanarm", {
  skip_on_cran()
  skip_if_not_installed("rstanarm")

  data(sleep)
  contrasts(sleep$group) <- contr.equalprior_pairs # See vignette
  stan_model <- suppressWarnings(rstanarm::stan_glmer(extra ~ group + (1 | ID), data = sleep, refresh = 0))

  set.seed(333)
  stan_model_p <- update(stan_model, prior_PD = TRUE)
  res1 <- si(stan_model, stan_model_p, verbose = FALSE)

  set.seed(333)
  res2 <- si(stan_model, verbose = FALSE)

  expect_s3_class(res1, "bayestestR_si")
  expect_equal(res1, res2, ignore_attr = TRUE)

  skip_if_not_installed("emmeans")
  set.seed(123)
  group_diff <- suppressWarnings(pairs(emmeans::emmeans(stan_model, ~group)))
  res3 <- si(group_diff, prior = stan_model, verbose = FALSE)

  expect_equal(res3$CI_low, -2.746, tolerance = 0.3)
  expect_equal(res3$CI_high, -0.4, tolerance = 0.3)
})
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