https://github.com/GPflow/GPflow
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Tip revision: 59e41536cd612555ec8f1039d09c3d76f5264cab authored by alexggmatthews on 17 February 2017, 10:43:52 UTC
Incorporating sphinx rtd theme in codebase. MIT license.
Tip revision: 59e4153
test_data_object.py
from __future__ import print_function
import GPflow
import numpy as np
import unittest
import tensorflow as tf
from GPflow import settings
float_type = settings.dtypes.float_type
np_float_type = np.float32 if float_type is tf.float32 else np.float64


class TestDataHolderSimple(unittest.TestCase):
    def setUp(self):
        self.m = GPflow.model.Model()
        self.rng = np.random.RandomState()
        self.m.X = GPflow.param.DataHolder(self.rng.randn(2, 2), on_shape_change='pass')
        self.m.Y = GPflow.param.DataHolder(self.rng.randn(2, 2), on_shape_change='raise')
        self.m.Z = GPflow.param.DataHolder(self.rng.randn(2, 2), on_shape_change='recompile')
        self.m.make_tf_array(np.empty(0))
        self.m._needs_recompile = False

    def test_types(self):
        assert self.m.X.value.dtype == np_float_type
        assert self.m.Y.value.dtype == np_float_type
        assert self.m.Z.value.dtype == np_float_type

    def test_same_shape(self):
        new_X = self.rng.randn(2, 2)
        self.m.X = new_X
        fd = {}
        self.m.update_feed_dict(self.m.get_feed_dict_keys(), fd)
        assert np.all(fd[self.m.X._tf_array] == new_X)
        self.assertFalse(self.m._needs_recompile)

        new_Y = self.rng.randn(2, 2)
        self.m.Y = new_Y
        fd = {}
        self.m.update_feed_dict(self.m.get_feed_dict_keys(), fd)
        assert np.all(fd[self.m.Y._tf_array] == new_Y)
        self.assertFalse(self.m._needs_recompile)

        new_Z = self.rng.randn(2, 2)
        self.m.Z = new_Z
        fd = {}
        self.m.update_feed_dict(self.m.get_feed_dict_keys(), fd)
        assert np.all(fd[self.m.Z._tf_array] == new_Z)
        self.assertFalse(self.m._needs_recompile)

    def test_pass(self):
        self.m.X = self.rng.randn(3, 3)
        self.assertFalse(self.m._needs_recompile)

    def test_raise(self):
        with self.assertRaises(ValueError):
            self.m.Y = self.rng.randn(3, 3)

    def test_recompile(self):
        self.m.Z = self.rng.randn(3, 3)
        self.assertTrue(self.m._needs_recompile)


class TestDataHolderIntegers(unittest.TestCase):
    def setUp(self):
        self.m = GPflow.model.Model()
        self.rng = np.random.RandomState()
        self.m.X = GPflow.param.DataHolder(self.rng.randint(0, 10, (2, 2)), on_shape_change='pass')
        self.m.X.make_tf_array()
        self.m._needs_recompile = False

    def test_types(self):
        assert self.m.X.value.dtype == np.int32

    def test_same_shape(self):
        new_X = self.rng.randint(0, 10, (2, 2))
        self.m.X = new_X
        fd = {}
        self.m.update_feed_dict(self.m.get_feed_dict_keys(), fd)
        assert np.all(fd[self.m.X._tf_array] == new_X)
        self.assertFalse(self.m._needs_recompile)


class TestDataHolderModels(unittest.TestCase):
    """
    We make test for Dataholder that enables to reuse model for different data
    with the same shape to the original.  We tested this for the six models.
    """
    def setUp(self):
        tf.reset_default_graph()
        self.rng = np.random.RandomState(0)
        self.X = self.rng.rand(20, 1)
        self.Y = np.sin(self.X) + 0.9 * np.cos(self.X*1.6) + self.rng.randn(*self.X.shape) * 0.8
        self.kern = GPflow.kernels.Matern32(1)

    def test_gpr(self):
        m = GPflow.gpr.GPR(self.X, self.Y, self.kern)
        m._compile()
        m.X = self.rng.randn(*self.X.shape)
        self.assertFalse(m._needs_recompile,
                         msg="Recompilation should be avoided for the same shape data")

        m.X = self.rng.randn(30, 1)
        self.assertFalse(m._needs_recompile,
                         msg="For GPR, recompilation should be avoided for the same shape data")

    def test_sgpr(self):
        m = GPflow.sgpr.SGPR(self.X, self.Y, self.kern, Z=self.X[::2])
        m._compile()
        m.X = self.rng.randn(*self.X.shape)
        self.assertFalse(m._needs_recompile,
                         msg="Recompilation should be avoided for the same shape data")

        m.X = self.rng.randn(30, 1)
        self.assertFalse(m._needs_recompile,
                         msg="For SGPR, recompilation should be avoided for the same shape data")

    def test_gpmc(self):
        m = GPflow.gpmc.GPMC(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT())
        m._compile()
        m.X = self.rng.randn(*self.X.shape)
        self.assertFalse(m._needs_recompile,
                         msg="Recompilation should be avoided for the same shape data")

        Xnew = self.rng.randn(30, 1)
        Ynew = np.sin(Xnew) + 0.9 * np.cos(Xnew*1.6) + self.rng.randn(*Xnew.shape)
        m.X = Xnew
        m.Y = Ynew
        self.assertTrue(m._needs_recompile,
                        msg="Recompilation should be necessary for different shape data")
        m._compile()  # make sure compilation is okay for new shapes.

    def test_sgpmc(self):
        m = GPflow.sgpmc.SGPMC(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT(), Z=self.X[::2])
        m._compile()
        m.X = self.rng.randn(*self.X.shape)
        self.assertFalse(m._needs_recompile,
                         msg="Recompilation should be avoided for the same shape data")

        m.X = self.rng.randn(30, 1)

        self.assertFalse(m._needs_recompile,
                         msg="Recompilation should not be necessary for different shape data")

    def test_svgp(self):
        m = GPflow.svgp.SVGP(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT(), Z=self.X[::2])
        m._compile()
        m.X = self.rng.randn(*self.X.shape)
        self.assertFalse(m._needs_recompile,
                         msg="Recompilation should be avoided for the same shape data")

        m.X = self.rng.randn(30, 1)

        self.assertFalse(m._needs_recompile,
                         msg="For SVGP, recompilation should be avoided for new shape data")

    def test_vgp(self):
        m = GPflow.vgp.VGP(self.X, self.Y, self.kern, likelihood=GPflow.likelihoods.StudentT())
        m._compile()
        m.X = self.rng.randn(*self.X.shape)
        self.assertFalse(m._needs_recompile,
                         msg="Recompilation should be avoided for the same shape data")

        Xnew = self.rng.randn(30, 1)
        Ynew = np.sin(Xnew) + 0.9 * np.cos(Xnew*1.6) + self.rng.randn(*Xnew.shape)
        m.X = Xnew
        m.Y = Ynew
        self.assertTrue(m._needs_recompile,
                        msg="Recompilation should be necessary for different shape data")
        m._compile()  # make sure compilation is okay for new shapes.


if __name__ == '__main__':
    unittest.main()
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