https://github.com/QBioLab/sequence-data-analysis-for-noise-control
Tip revision: a488b15c0418a8e604ce6339aae7b505ae3252c9 authored by Aria on 20 December 2020, 06:24:49 UTC
Update README.md
Update README.md
Tip revision: a488b15
combine_repeat.py
# -*- coding: utf-8 -*-
"""
Created on Fri Nov 13 21:49:01 2020
@author: chena
"""
import pandas as pd
def combine(prefix):
table1 = pd.read_csv("../result/scRNA_seq_2020_11_1-7/{}_1.csv".format(prefix))
table2 = pd.read_csv("../result/scRNA_seq_2020_11_1-7/{}_2.csv".format(prefix))
barcode = table1.columns[0]
table = pd.concat([table1,table2],axis=0)
del table1
del table2
result = table.groupby(barcode).sum()
del table
result.to_csv('../result/scRNA_seq_2020_11_1-7/{}_withInde.csv'.format(prefix))
prefixs = ['A1A2','B1A3','C1C2']
for p in prefixs:
combine(p)