https://github.com/cran/RandomFields
Tip revision: fab3d29ef16569604858ee648b9e1f6f7d4a7c96 authored by Martin Schlather on 21 September 2014, 00:00:00 UTC
version 3.0.42
version 3.0.42
Tip revision: fab3d29
userinterfaces.cc
/*
Authors
Martin Schlather, schlather@math.uni-mannheim.de
library for simulation of random fields
Copyright (C) 2001 -- 2014 Martin Schlather,
This program is free software; you can redistribute it and/or
modify it under the terms of the GNU General Public License
as published by the Free Software Foundation; either version 3
of the License, or (at your option) any later version.
RO
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
*/
#include <R.h>
#include <Rdefines.h>
#include <R_ext/Linpack.h>
#include <math.h>
#include <stdio.h>
#include <stdlib.h>
#include <unistd.h>
#include <string.h>
#include "RF.h"
#include "primitive.h"
// #include "Covariance.h"
#define nOptimVar 4
const char * OPTIM_VAR_NAMES[nOptimVar] =
{"never", "respect bounds", "try", "yes"}; // keep yes last !!
#define nOptimiser 8
const char * OPTIMISER_NAMES[nOptimiser] =
{"optim", "optimx", "soma", "nloptr", "GenSA", "minqa", "pso", "DEoptim"
};
#define nNLOPTR 15
const char *NLOPTR_NAMES[nNLOPTR] =
// Zeiten fuer ein Bsp; besser als optim?
// optim 3.6
// optimx 3.5
{"NLOPT_GN_DIRECT", // 4.1 ; +- ; laufen nicht an den Rand heran!!
"NLOPT_GN_DIRECT_L", //
"NLOPT_GN_DIRECT_L_RAND", //
"NLOPT_GN_DIRECT_NOSCAL", //
"NLOPT_GN_DIRECT_L_NOSCAL", //
"NLOPT_GN_DIRECT_L_RAND_NOSCAL", //
"NLOPT_GN_ORIG_DIRECT", // 3.
"NLOPT_GN_ORIG_DIRECT_L", //
//"NLOPT_GD_STOGO", // benoetigt gradienten (b. g.)
// "NLOPT_GD_STOGO_RAND", // b. g.
// "NLOPT_LD_SLSQP", // b. g.
//"NLOPT_LD_LBFGS_NOCEDAL", // b. g.
// "NLOPT_LD_LBFGS", // b. g.
"NLOPT_LN_PRAXIS", // 3.1; eher schlechter als optim
// "NLOPT_LD_VAR1", // b. g.
// "NLOPT_LD_VAR2", // b. g.
// "NLOPT_LD_TNEWTON", // b. g.
// "NLOPT_LD_TNEWTON_RESTART", // b. g.
//"NLOPT_LD_TNEWTON_PRECOND", // b. g.
//"NLOPT_LD_TNEWTON_PRECOND_RESTART", // b. g.
"NLOPT_GN_CRS2_LM",// 3.8; gut; viel naeher am Rand als die obigen _GN_
// "NLOPT_GN_MLSL", // b. g.
//"NLOPT_GD_MLSL", // b. g.
//"NLOPT_GN_MLSL_LDS", // b. g.
// "NLOPT_GD_MLSL_LDS", // b. g.
//"NLOPT_LD_MMA", // b. g.
"NLOPT_LN_COBYLA", // 1.9; laeuft vollstaendig ran
// "NLOPT_LN_NEWUOA", // funktioniert nicht. Grund nicht nachgeschaut
//"NLOPT_LN_NEWUOA_BOUND", // funktioniert nicht. Grund nicht nachgeschaut
"NLOPT_LN_NELDERMEAD", // 0.8 !! laeuft vollstaendig ran
"NLOPT_LN_SBPLX", // 2.6; laeuft vollstaendig ran
// "NLOPT_LN_AUGLAG", // b. g.
// "NLOPT_LD_AUGLAG", // b. g.
// "NLOPT_LN_AUGLAG_EQ", // b. g.
// "NLOPT_LD_AUGLAG_EQ", // b. g.
"NLOPT_LN_BOBYQA", // 1.8 !! Und ist genauso gut wie optim im Bsp!!
"NLOPT_GN_ISRES" // aehnlich NLOPT_GN_CRS2_LM
};
#define nLikelihood 4
const char * LIKELIHOOD_NAMES[nLikelihood] =
{"auto", "full", "composite", "selection"};
void ResetWarnings(int * all) {
internal_param *w = &(GLOBAL.internal);
w->warn_oldstyle = w->warn_newstyle = w->warn_Aniso =
w->warn_normal_mode = w->warn_mode = w->warn_coordinates =
w->warn_on_grid = w->warn_new_definitions = w->warn_aspect_ratio =
true;
if (*all) w->warn_ambiguous = true;
}
#define MaxMaxInts 9
void GetMaxDims(int *maxints) { *maxints = MaxMaxInts; }
void GetrfParameters(int *covmaxchar, int *methodmaxchar,
int *typemaxchar,
int *covnr, int *methodnr, int *typenr,
int *maxdim,
int *maxmodels) {
// if (currentNrCov==-1) InitModelList();
int i=0;
*covmaxchar=MAXCHAR;
*methodmaxchar=METHODMAXCHAR;
*typemaxchar=-1; // obsolete
*covnr=currentNrCov;
*methodnr=(int) Forbidden;
*typenr=ROLE_LAST;
maxdim[i++]=MAXCOVDIM;
maxdim[i++]=MAXMLEDIM;
maxdim[i++]=MAXSIMUDIM;
maxdim[i++]=MAXCEDIM;
maxdim[i++]=MAXTBMSPDIM;
maxdim[i++]=MAXMPPDIM;
maxdim[i++]=MAXHYPERDIM;
maxdim[i++]=MAXNUGGDIM;
maxdim[i++]=MAXVARIODIM;
assert(i == MaxMaxInts);
*maxmodels=MAXFIELDS;
}
void GetrfParametersI(int *covmaxchar, int *methodmaxchar, int *typemaxchar,
int *covnr, int *methodnr, int *typenr,
int *maxdim, int *maxmodels){
if (currentNrCov==-1) InitModelList();
GetrfParameters(covmaxchar, methodmaxchar, typemaxchar,
covnr, methodnr, typenr, maxdim, maxmodels);
}
// {careless, sloppy, easygoing, normal, precise, pedantic, neurotic}
bool skipchecks[nr_modes] = {true, false, false, false, false, false, false},
allowdistance0[nr_modes] = {true, false, false, false, false, false, false},
ce_force[nr_modes] = {true, true, true, false, false, false, false},
ce_dependent[nr_modes] = {true, true, true, false, false, false, false},
grid[nr_modes] = {true, true, true, true, true, false, false},
fit_split[nr_modes] = {false, true, true, true, true, true, true},
fit_refine[nr_modes] = {false, false, false, true, true, true, true},
fit_reoptimise[nr_modes] = {false, false, false, true, true, true, true},
fit_ratiotest_approx[nr_modes]={true, true, true, true, false, false, false},
fit_cross_refit[nr_modes] = {false, false, false, false, true, true, true}
;
char pch[nr_modes] = {'\0', '\0', '\0', '.', '.', '.', '.'}
;
int locmaxn[nr_modes] = {3000, 4000, 6000, 8000, 9000, 10000000, 10000000},
ce_trials[nr_modes] = {1, 1, 2, 3, 4, 5, 6},
spectral_lines[nr_modes] = {300, 500, 1500, 2500, 3500, 5000, 10000},
tbm_lines[nr_modes] = {40, 40, 50, 60, 80, 100, 200},
mpp_n_estim_E[nr_modes] = {10000, 10000, 20000,50000,80000,100000,1000000},
hyper_superpos[nr_modes] = {200, 300, 450, 700, 1000, 2000, 5000},
fit_critical[nr_modes] = {-1, -1, -1, 0, 1, 2, 3},
fit_ncrit[nr_modes] = { 2, 4, 5, 5, 10, 10, 20},
fit_optim_var[nr_modes] = { 2, 2, 2, 2, 1, 1, 1}
;
double exactness[nr_modes] = {false, false, false, RF_NA, true, true, true},
matrixtolerance[nr_modes] ={1e-6, 1e-6, 1e-6, 1e-12, 1e-14, 0, 0},
ce_tolIm[nr_modes] = {1e6, 1e6, 1e-1, 1e-3, 1e-7, 0, 0},
ce_tolRe[nr_modes] = {-1e6, -1e6, -1e-3, -1e-7, -1e-14, 0, 0},
ce_approx_step[nr_modes] = {1.0, 1.0, 1.0, 1.0, 0.0, 0.0, 0.0},
direct_tol[nr_modes] = {1e-8, 1e-8, 1e-10, 1e-12, 1e-14, 0, 0},
nugget_tol[nr_modes] = {1e-8, 1e-8, 1e-12, 0, 0, 0, 0},
tbm_linefactor[nr_modes] = {1.5, 1.5, 1.7, 2.0, 3.0, 5.0, 6.0},
mpp_intensity[nr_modes] = {50, 50, 80, 100, 200, 500, 1000},
mpp_zero[nr_modes] = {1e-2, 1e-2, 1e-3, 1e-4, 1e-5, 1e-6, 1e-7},
max_max_gauss[nr_modes] = {2, 2, 3, 4, 5, 6, 6}
;
const char *f_opt[nr_modes] = {"optim", "optim", "optim", "optim", "optimx", "optimx", "optimx"}; // to do optimx
void SetDefaultModeValues(int old, int m){
int i;
// high fast, normal, save, pedantic
GLOBAL.general.skipchecks = skipchecks[m];
GLOBAL.general.pch = pch[m];
GLOBAL.general.exactness = exactness[m];
GLOBAL.general.matrixtolerance = matrixtolerance[m];
GLOBAL.general.allowdist0 = allowdistance0[m];
GLOBAL.krige.locmaxn = locmaxn[m];
GLOBAL.krige.locsplitn[0] = (locmaxn[m] * 5) / 8;
GLOBAL.krige.locsplitn[1] = locmaxn[m] / 40;
GLOBAL.krige.locsplitn[2] = locmaxn[m] / 8;
GLOBAL.ce.force = ce_force[m];
GLOBAL.ce.tol_im = ce_tolIm[m];
GLOBAL.ce.tol_re = ce_tolRe[m];
GLOBAL.ce.trials = ce_trials[m];
GLOBAL.ce.dependent = ce_dependent[m];
GLOBAL.ce.approx_grid_step = ce_approx_step[m];
GLOBAL.direct.svdtolerance = direct_tol[m];
GLOBAL.nugget.tol = nugget_tol[m];
for(i=0; i<4; GLOBAL.spectral.lines[i++] = spectral_lines[m]);
GLOBAL.spectral.grid = grid[m];
GLOBAL.tbm.lines[1] = tbm_lines[m];
GLOBAL.tbm.lines[2] = (tbm_lines[m] * 25) / 6;
GLOBAL.tbm.linesimufactor = tbm_linefactor[m];
GLOBAL.tbm.grid = grid[m];
GLOBAL.mpp.n_estim_E = mpp_n_estim_E[m];
for(i=0; i<4; GLOBAL.mpp.intensity[i++] = mpp_intensity[m]);
GLOBAL.mpp.about_zero = mpp_zero[m];
GLOBAL.hyper.superpos = hyper_superpos[m];
GLOBAL.extreme.standardmax = max_max_gauss[m];
fit_param *f = &(GLOBAL.fit);
f->split = fit_split[m];
f->refine_onborder = fit_refine[m];
f->reoptimise = fit_reoptimise[m];
f->ratiotest_approx = fit_ratiotest_approx[m];
f->cross_refit = fit_cross_refit[m];
f->critical = fit_critical[m];
f->n_crit = fit_ncrit[m];
f->optim_var_estim = fit_optim_var[m];
char dummy[10];
strcpy(dummy, f_opt[m]);
f->optimiser = Match(dummy, OPTIMISER_NAMES, nOptimiser);
// printf("optimiser %d %s\n", f->optimiser, OPTIMISER_NAMES[f->optimiser]);
internal_param *w = &(GLOBAL.internal);
w->stored_init = false;
if (m < normal)
w->warn_oldstyle = w->warn_newstyle = w->warn_Aniso = w->warn_ambiguous =
w->warn_on_grid = w->warn_aspect_ratio = false;
else if (m>old) {
w->warn_oldstyle = w->warn_Aniso = w->warn_new_definitions =
w->warn_aspect_ratio = true;
if (m > normal) w->warn_ambiguous = true;
}
if (m != normal && w->warn_mode) {
PRINTF("Note that the option '%s' is still in an experimental stage, so that the behaviour may change (slightly) in future.", general[GENERAL_MODUS]);
w->warn_mode = false;
}
}
SEXP GetAllModelNames(){
if (currentNrCov==-1) InitModelList();
int i, n;
SEXP names;
for (n=i=0; i<currentNrCov; i++)
if (CovList[i].name[0] != '-') n++;
PROTECT(names = allocVector(STRSXP, n));
for (n=i=0; i<currentNrCov; i++) {
if (CovList[i].name[0] != '-') {
SET_STRING_ELT(names, n++, mkChar(CovList[i].name));
}
}
UNPROTECT(1);
return names;
}
void GetModelName(int *nr,char **name, char **nick){
if (currentNrCov==-1) InitModelList();
if ((*nr<0) ||(*nr>=currentNrCov)) {
strcopyN(*name,"", MAXCHAR);
strcopyN(*nick,"", MAXCHAR);
return;
}
strcopyN(*name, CovList[*nr].name, MAXCHAR);
strcopyN(*nick, CovList[*nr].nick, MAXCHAR);
}
void GetNrParameters(int *covnr, int* kappas) {
if (currentNrCov==-1) InitModelList();
if (*covnr<0 || *covnr>=currentNrCov) {*kappas=-999;}
else *kappas = CovList[*covnr].kappas;
}
void GetModelNr(char **name, int *nr) {
*nr = getmodelnr(*name);
}
SEXP GetParameterNames(SEXP nr) {
if (currentNrCov==-1) InitModelList();
cov_fct *C = CovList + INTEGER(nr)[0]; // nicht gatternr
SEXP pnames;
int i;
// print("hello %s\n", C->name);
PROTECT(pnames = allocVector(STRSXP, C->kappas));
for (i=0; i<C->kappas; i++) {
SET_STRING_ELT(pnames, i, mkChar(C->kappanames[i]));
}
UNPROTECT(1);
return(pnames);
}
SEXP GetCathegoryNames() {
SEXP pnames;
int i;
PROTECT(pnames = allocVector(STRSXP, (int) OtherType + 1));
for (i=0; i<=OtherType; i++) {
SET_STRING_ELT(pnames, i, mkChar(CAT_TYPENAMES[i]));
}
UNPROTECT(1);
return(pnames);
}
SEXP GetSubNames(SEXP nr) {
cov_fct *C = CovList + INTEGER(nr)[0]; // nicht gatternr
SEXP subnames, list, subintern;
int i, j,
nsub = C->maxsub;
// parameter and submodels may have identical names
// this means instead of a numerical parameter a submodel can be
// given. This happens, for instance, for nonstWM
PROTECT(list = allocVector(VECSXP, 2));
PROTECT(subnames = allocVector(STRSXP, nsub));
PROTECT(subintern = allocVector(INTSXP, nsub));
for (j=i=0; i<C->maxsub; i++) {
if (C->subintern[i])
PRINTF("%s subintern[%d]=true\n", C->nick, i);
// since 17 May 2014:
INTEGER(subintern)[i] = C->subintern[i];
SET_STRING_ELT(subnames, j++, mkChar(C->subnames[i]));
// formely:
//if (!C->subintern[i]) SET_STRING_ELT(subnames, j++,
// mkChar(C->subnames[i]));
//for (nsub=i=0; i<C->maxsub; i++) nsub += !C->subintern[i];
}
SET_VECTOR_ELT(list, 0, subnames);
SET_VECTOR_ELT(list, 1, subintern);
UNPROTECT(3);
return(list);
}
SEXP GetRange(){
assert(false); // muss neu geschrieben werden, als SEXP
return R_NilValue;
/*
// never change double without crosschecking with fcts in RFCovFcts.cc!
// index is increased by one except index is the largest value possible
cov_fct *C;
cov_model cov;
range_type *r;
int i,j, kappas;
if (currentNrCov==-1) InitModelList();
if ((*nr<0) || (*nr>=currentNrCov)) goto ErrorHandling;
C = CovList + *nr; // nicht gatternr
kappas = CovList[*nr].kappas;
if (*lparam > kappas || *lrange != kappas * 4) goto ErrorHandling;
if (*index < 0) {
getrange->n = 1;
for (i=0; i<lparam; i++) {
cov.p[i] = (double *) CALLOC(sizeof(double), 1);
cov.p[i][0] = param[i];
}
getrange->n = 1;
C->range(&cov, &getrange);
}
if (*index >= getrange.n) goto ErrorHandling;
r = getrange.ranges + *index;
for (j=i=0; i<kappas; i++) {
range[j++] = r->min[i];
range[j++] = r->max[i];
range[j++] = r->pmin[i];
range[j++] = r->pmax[i];
}
return;
ErrorHandling :
for (i=0; i<*lrange; i++) range[i]=RF_NA;
*index = -100;
return;
*/
}
void PMLheader(char* firstcolumn, int nick) {
int i;
char header1[]=" # cir cut int TBM spe tdir seq ave coi hyp spe\n";
char header2[]=" p cul off rin ctr ect uen rag ns erp cif\n";
for (i=0; i<=nick; i++) PRINTF(firstcolumn, "");
PRINTF("%4s", ""); PRINTF(header1);
for (i=0; i<=nick; i++) PRINTF(firstcolumn, "");
PRINTF("%4s", ""); PRINTF(header2);
}
void PrintModelList(int *intern, int *operat, int* Nick)
{
int i, k, last_method, m, OP;
//char header[]="circ cut intr TBM spec dir seq Mark ave add hyp part\n";
char coded[6][2]={"-", "X", "+", "N", "H", "S"};
// char typenames[4][2]={"i", "f", "s", "n"};
char specialnames[4][2]={".", "n", "f", "?"};
char firstcolumn[20], name[MAXCHAR];
int maxchar=10; // <= MAXCHAR=14
int type[MAXNRCOVFCTS], op[MAXNRCOVFCTS], monotone[MAXNRCOVFCTS],
finite[MAXNRCOVFCTS], simpleArguments[MAXNRCOVFCTS],
internal[MAXNRCOVFCTS], dom[MAXNRCOVFCTS],
iso[MAXNRCOVFCTS], vdim[MAXNRCOVFCTS], maxdim[MAXNRCOVFCTS],
nick = *Nick;
last_method = (int) Nothing; // even not special method
if (currentNrCov==-1) {
InitModelList();
// if (PL>5) PRINTF("List of covariance functions initiated.\n");
}
if (CovList==NULL) {PRINTF("There are no functions available!\n");}
else {
cov_fct *C;
GetAttr(type, op, monotone, finite, simpleArguments,
internal, dom, iso, maxdim, vdim);
sprintf(firstcolumn,"%%%ds", -maxchar);
PRINTF("\n\n");
PRINTF("%20s List of models\n", "");
PRINTF("%20s ==============\n", "");
PRINTF("%10s[See also PrintMethodList for the names of the columns();\n",
"");
PRINTF("%10s use `operator=TRUE' to see all available models ]\n",
"");
for (OP = 0; OP <= *operat; OP++) {
C = CovList;
PRINTF("\n\n");
if (OP) {
PRINTF("%4s Operators\n", "");
PRINTF("%4s =========\n\n", "");
} else {
PRINTF("%4s Simple models\n", "");
PRINTF("%4s =============\n\n", "");
}
PMLheader(firstcolumn, nick);
for (k=1, i=0; i<currentNrCov; i++, C++) {
if (!isPosDef((Types)(type[i])) && !isUndefinedType((Types)(type[i])))
continue;
if (op[i] != OP) continue;
if (!*intern && internal[i]) continue;
strcopyN(name, C->name, maxchar);
if (strncmp(C->name, InternalName, strlen(InternalName)) ==0) {
// printf("%s %d\n", C->name, *intern);
if (*intern < 2) continue;
}
PRINTF("%2d. ", k++);
PRINTF(firstcolumn, name);
if (nick) {
strcopyN(name, C->nick, maxchar);
PRINTF(firstcolumn, name);
}
// if (C->kappas > 9) PRINTF(
PRINTF("%2d ", C->kappas);
// PRINTF("%s", internal[i] ? specialnames[4] :
// (C->maxsub==0) ? specialnames[5] : specialnames[op[i]]);
PRINTF("%s",
specialnames[isNormalMixture(monotone[i]) ? 1
: finite[i] == 1 ? 2
: isUndefinedType((Types)(type[i])) ||
monotone[i]<0 || finite[i] < 0 ? 3
: 0]
);
PRINTF(" ");
// above works since normal mixture cannot have finite.range
assert(internal[i]==0 || internal[i]==1);
for (m=(int) CircEmbed; m<last_method; m++)
if (m != Nugget && m != Markov)
PRINTF("%3s%s", coded[(int) C->implemented[m]],
" ");
PRINTF("\n");
}
}
PMLheader(firstcolumn, nick);
PRINTF("\n%4sLegend:","");
PRINTF("\n%4s=======\n","");
PRINTF("First row after number of parameters:\n");
PRINTF("'%s': normal mixture model\n",
specialnames[1]);
PRINTF("'%s': finite range\n",
specialnames[2]);
PRINTF("'%s': neither a normal mixture nor a finite range\n",
specialnames[0]);
PRINTF("'%s': could be a normal mixture or have a finite range\n",
specialnames[3]);
PRINTF("\nAll other rows:\n");
PRINTF("'%s': method not available\n",
coded[0]);
PRINTF("'%s': method available for at least some parameter values\n",
coded[1]);
PRINTF("'%s': integral for the covariance is evaluated only numerically\n", coded[2]);
PRINTF("\n");
}
}
void PrintModelList() {
int wahr = 1, Zero = 0;
PrintModelList(&wahr, &wahr, &Zero);
}
void GetModelList(int* idx, int*internal) {
int i, j, m;
if (currentNrCov==-1) InitModelList();
if (CovList==NULL) return;
for (j=i=0; i<currentNrCov; i++) {
if (!*internal && CovList[i].internal) continue;
for (m=(int) CircEmbed; m<(int) Nothing; m++) {
idx[j++] = CovList[i].implemented[m];
}
}
return;
}
void GetAttr(int *type, int *op, int *monotone, int *finiterange,
int *simpleArguments,
int *internal, int *dom, int *iso, int *maxdim, int *vdim) {
#define MAXPN 10 /* only used for testing purposes */
int nr, p, k;
cov_model Cov,
*cov = &Cov;
range_type range;
// range_type *range;
cov_fct *C = CovList;
for (p=0; p<MAXPARAM; p++)
cov->px[p] = (double*) CALLOC(MAXPN, sizeof(double));
Cov.tsdim = 1;
Cov.vdim2[0] = Cov.vdim2[1] = 1;
Cov.nsub = 2;
for (nr=0; nr<currentNrCov; nr++, C++){
Cov.nr = nr;
type[nr] = C->Type;
op[nr] = (int) C->maxsub > 0;
C->range(cov, &range);
maxdim[nr] = C->maxdim;
finiterange[nr] = C->finiterange;
simpleArguments[nr] = true;
for (k=0; k<C->kappas; k++)
if (C->kappatype[k] != INTSXP && C->kappatype[k] != REALSXP) {
simpleArguments[nr] = false;
break;
}
monotone[nr] = C->Monotone;
internal[nr] = C->internal;
dom[nr] = C->domain;
iso[nr] = C->isotropy;
vdim[nr] = C->vdim;
}
for (p=0; p<MAXPARAM; p++) free(cov->px[p]);
}
//static int ZZ = 0;
double Real(SEXP p, char *name, int idx) {
char msg[200];
// if(++ZZ==65724){printf("type=%d %d '%s'\n",ZZ,TYPEOF(p), CHAR(STRING_ELT(p,0)));cov_model *cov;crash(cov);}
if (p != R_NilValue)
switch (TYPEOF(p)) {
case REALSXP : return REAL(p)[idx];
case INTSXP : return INTEGER(p)[idx]==NA_INTEGER
? RF_NA : (double) INTEGER(p)[idx];
case LGLSXP : return LOGICAL(p)[idx]==NA_LOGICAL ? RF_NA
: (double) LOGICAL(p)[idx];
default : {}
}
// MEMCOPY(msg, p, 300); print("%s\n", msg);
sprintf(msg, "'%s' cannot be transformed to double! (type=%d)\n",
name, TYPEOF(p));
//printf("\n>>>> '%s'\n", CHAR(STRING_ELT(p, 0)));
ERR(msg);
return RF_NA; // to avoid warning from compiler
}
void Real(SEXP el, char *name, double *vec, int maxn) {
char msg[200];
int i, j, n;
if (el == R_NilValue) {
sprintf(msg,"'%s' cannot be transformed to double.\n", name);
ERR(msg);
}
n = length(el);
for (j=i=0; i<maxn; i++) {
vec[i] = Real(el, name, j);
if (++j >= n) j=0;
}
return;
}
int Integer(SEXP p, char *name, int idx, bool nulltoNA) {
char msg[200];
if (p != R_NilValue) {
switch(TYPEOF(p)) {
case INTSXP :
return INTEGER(p)[idx];
case REALSXP :
double value;
value = REAL(p)[idx];
if (ISNAN(value)) {
return NA_INTEGER;
//sprintf(msg, "%s: NAs not allowed for integer valued parameters", name);
// ERR(msg);
}
if (value == trunc(value)) return (int) value;
else {
sprintf(msg, "%s: integer value expected", name);
ERR(msg);
}
case LGLSXP :
return LOGICAL(p)[idx]==NA_LOGICAL ? NA_INTEGER : (int) LOGICAL(p)[idx];
default : {}
}
} else if (nulltoNA) return NA_INTEGER;
sprintf(msg, "%s: unmatched type of parameter [type=%d]", name, TYPEOF(p));
ERR(msg);
return NA_INTEGER; // compiler warning vermeiden
}
int Integer(SEXP p, char *name, int idx) {
return Integer(p, name, idx, false);
}
void Integer(SEXP el, char *name, int *vec, int maxn) {
char msg[200];
int i, j, n;
if (el == R_NilValue) {
sprintf(msg, "'%s' cannot be transformed to integer.\n",name);
ERR(msg);
}
n = length(el);
for (j=i=0; i<maxn; i++) {
vec[i] = Integer(el, name, j);
if (++j >= n) j=0;
}
}
void Integer2(SEXP el, char *name, int *vec) {
char msg[200];
int n;
if (el == R_NilValue || (n = length(el))==0) {
sprintf(msg, "'%s' cannot be transformed to integer.\n",name);
ERR(msg);
}
vec[0] = Integer(el, name, 0);
if (n==1) vec[1] = vec[0];
else {
vec[1] = Integer(el, name, n-1);
if (n > 2) {
int i,
v = vec[0] + 1;
for (i = 1; i<n; i++, v++)
if (Integer(el, name, i) != v) ERR("not a sequence of numbers");
}
}
}
bool Logical(SEXP p, char *name, int idx) {
char msg[200];
if (p != R_NilValue)
switch (TYPEOF(p)) {
case REALSXP: return ISNAN(REAL(p)[idx]) ? NA_LOGICAL : (bool) REAL(p)[idx];
case INTSXP :
return INTEGER(p)[idx]==NA_INTEGER ? NA_LOGICAL : (bool) INTEGER(p)[idx];
case LGLSXP : return LOGICAL(p)[idx];
default : {}
}
sprintf(msg, "'%s' cannot be transformed to logical.\n", name);
ERR(msg);
return NA_LOGICAL; // to avoid warning from compiler
}
char Char(SEXP el, char *name) {
char msg[200];
SEXPTYPE type;
if (el == R_NilValue) goto ErrorHandling;
type = TYPEOF(el);
if (type == CHARSXP) return CHAR(el)[0];
if (type == STRSXP) {
if (length(el)==1) {
if (strlen(CHAR(STRING_ELT(el,0))) == 1)
return (CHAR(STRING_ELT(el,0)))[0];
else if (strlen(CHAR(STRING_ELT(el,0))) == 0)
return '\0';
}
}
ErrorHandling:
sprintf(msg, "'%s' cannot be transformed to character.\n", name);
ERR(msg);
return 0; // to avoid warning from compiler
}
void String(SEXP el, char *name, char names[MAXUNITS][MAXCHAR]) {
int i,
l = length(el);
char msg[200];
SEXPTYPE type;
if (el == R_NilValue) goto ErrorHandling;
if (l > MAXUNITS) {
ERR1("number of variable names exceeds %d. Take abbreviations?",
MAXUNITS);
}
type = TYPEOF(el);
// printf("type=%d %d %d %d\n", TYPEOF(el), INTSXP, REALSXP, LGLSXP);
if (type == CHARSXP) {
for (i=0; i<l; i++) {
names[i][0] = CHAR(el)[i];
names[i][1] = '\0';
}
} else if (type == STRSXP) {
for (i=0; i<l; i++) {
//print("%d %d\n", i, l);
strcopyN(names[i], CHAR(STRING_ELT(el, i)), MAXCHAR);
}
} else goto ErrorHandling;
return;
ErrorHandling:
sprintf(msg, "'%s' cannot be transformed to character.\n", name);
ERR(msg);
}
#define INT Integer(el, name, 0)
#define LOG Logical(el, name, 0)
#define NUM Real(el, name, 0)
#define CHR Char(el, name)
#define STR(X, N) strcopyN(X, CHAR(STRING_ELT(el, 0)), N);
double NonNegInteger(SEXP el, char *name) {
int num;
num = INT;
if (num<0) {
num=0;
char msg[200];
sprintf(msg,"'%s' which has been negative is set 0.\n",name);
warning(msg);
}
return num;
}
double NonNegReal(SEXP el, char *name) {
double num;
num = NUM;
if (num<0.0) {
num=0.0;
char msg[200];
sprintf(msg,"%s which has been negative is set 0.\n",name);
warning(msg);
}
return num;
}
double NonPosReal(SEXP el, char *name) {
double num;
num = NUM;
if (num>0.0) {
num=0.0;
char msg[200];
sprintf(msg,"%s which has been positive is set 0.\n",name);
warning(msg);
}
return num;
}
double PositiveInteger(SEXP el, char *name) {
int num;
num = INT;
if (num<=0) {
num=0;
char msg[200];
sprintf(msg,"'%s' which has been negative is set 0.\n",name);
warning(msg);
}
return num;
}
double PositiveReal(SEXP el, char *name) {
double num;
num = NUM;
if (num<=0.0) {
num=0.0;
char msg[200];
sprintf(msg,"%s which has been negative is set 0.\n",name);
warning(msg);
}
return num;
}
#define POS0INT NonNegInteger(el, name) /* better: non-negative */
#define POS0NUM NonNegReal(el, name)
#define NEG0NUM NonPosReal(el, name)
#define POSINT PositiveInteger(el, name) /* better: non-negative */
#define POSNUM PositiveReal(el, name)
void getUnits(SEXP el, char VARIABLE_IS_NOT_USED *name,
char units[MAXUNITS][MAXUNITSCHAR],
char units2[MAXUNITS][MAXUNITSCHAR]) {
int i, j,
l = length(el);
if (TYPEOF(el) != NILSXP && TYPEOF(el) == STRSXP && l >= 1) {
for (i=j=0; i<MAXUNITS; i++, j=(j + 1) % l) {
strcopyN(units[i], CHAR(STRING_ELT(el, j)), MAXUNITSCHAR);
if (units2!=NULL) {
strcopyN(units2[i], CHAR(STRING_ELT(el, j)), MAXUNITSCHAR);
}
}
} else ERR("invalid units");
}
SEXP UNITS(char units[MAXUNITS][MAXUNITSCHAR]) {
SEXP unitnames;
int nn;
PROTECT(unitnames = allocVector(STRSXP, MAXUNITS));
for (nn=0; nn<MAXUNITS; nn++) {
SET_STRING_ELT(unitnames, nn, mkChar(units[nn]));
}
UNPROTECT(1);
return unitnames;
}
int GetName(SEXP el, char *name, const char * List[], int n,
int defaultvalue) {
char msg[1000], dummy[1000];
int i,
nM1 = n - 1;
if (TYPEOF(el) == NILSXP) goto ErrorHandling;
if (TYPEOF(el) == STRSXP) {
int m = Match((char*) CHAR(STRING_ELT(el, 0)), List, n);
if (m >= 0) return m; else {
if (strcmp((char*) CHAR(STRING_ELT(el, 0)), " ") == 0 ||
strcmp((char*) CHAR(STRING_ELT(el, 0)), "") == 0) {
goto ErrorHandling;
}
}
}
sprintf(dummy, "'%s': unknown value '%s'. Possible values are:",
name, CHAR(STRING_ELT(el, 0)));
for (i=0; i<nM1; i++) {
sprintf(msg, "%s '%s',", dummy, List[i]);
strcpy(dummy, msg);
}
sprintf(msg,"%s '%s'.", dummy, List[i]);
ERR(msg);
ErrorHandling:
if (defaultvalue >= 0) return defaultvalue;
sprintf(msg, "'%s': no value given.", name);
ERR(msg);
return 999;// to avoid warning from compiler
}
int GetName(SEXP el, char *name, const char * List[], int n) {
return GetName(el, name, List, n, -1);
}
void CE_set(SEXP el, int j, char *name, ce_param *cp, bool isList) {
char msg[200];
switch(j) {
case 0: cp->force = LOG; break;
case 1:
Real(el, name, cp->mmin, MAXCEDIM) ;
int d;
for (d=0; d<MAXCEDIM; d++) {
if (cp->mmin[d]<0.0) {
if ((cp->mmin[d]>-1.0)) {
cp->mmin[d] = -1.0;
sprintf(msg, "'%s' set to -1.0.\n", name);
warning(msg);
}
}
}
break;
case 2: int strat;
strat = INT;
if (strat>LASTSTRATEGY) {
sprintf(msg, "%s <= %d not satisfied\n", name, LASTSTRATEGY);
warning(msg);
} else cp->strategy= (char) strat;
break;
case 3: {
cp->maxGB = POSNUM;
if (!isList) cp->maxmem = MAXINT;
} break;
case 4: {
cp->maxmem = POSINT;
if (!isList) cp->maxGB = RF_INF;
} break;
case 5: cp->tol_im = POS0NUM; break;
case 6: cp->tol_re = NEG0NUM; break;
case 7: cp->trials = NUM;
if (cp->trials<1) {
cp->trials=1;
sprintf(msg, "%s is set to 1\n", name);
warning(msg);
}
break;
case 8: cp->useprimes = LOG; break;
case 9: cp->dependent = LOG; break;
case 10: cp->approx_grid_step = POS0NUM; break;
case 11: cp->maxgridsize = POS0INT; break;
default: ERR("unknown parameter for GLOBAL.general");
}
}
#define prefixN 24
const char * prefixlist[prefixN] =
{"", // -1
"general", "gauss", "krige",
"circulant", "direct", "nugget",//6, //"markov",
"sequ", "spectral", "tbm",
"mpp", "hyper", "maxstable", // 12
"br", "distr", "fit", // 15
"empvario", "gui", "graphics",// 18
"registers", "internal", "coords", "special",
"obsolete"// 21
};
// IMPORTANT: all names of general must be at least 3 letters long !!!
const char *general[generalN] =
{ "modus_operandi", "printlevel", "storing",
"skipchecks", "every", "gridtolerance",
"pch", "practicalrange", "spConform",
"cPrintlevel", "exactness", "matrix_inversion",
"matrix_tolerance", "allowdistanceZero", "na_rm_lines",
"vdim_close_together", "expected_number_simu", "seed",
"detailed_output", "asList", "Ttriple"};
const char *gauss[gaussN]= {"paired", "stationary_only", "approx_zero",
"direct_bestvar", "loggauss"};
const char *krige[krigeN] = {"method", "return_variance", "locmaxn",
"locsplitn", "locsplitfactor", "fillall",
"cholesky_R"};
const char *CE[CEN] = {"force", "mmin", "strategy", "maxGB",
"maxmem", "tolIm","tolRe",
"trials", "useprimes", "dependent",
"approx_step", "approx_maxgrid"};
const char *direct[directN] = {"root_method", "svdtolerance", "max_variab"};
const char * markov[markovN] = {"neighbours", "precision", "cyclic",
"maxmem_markov"};
const char * pnugget[pnuggetN] ={"tol"};
const char * sequ[sequN] ={"max_variables", "back_steps", "initial"};
const char * spectral[spectralN] = {"sp_lines", "sp_grid", "ergodic",
"prop_factor", "sigma"};
const char * pTBM[pTBMN] = {"reduceddim", "fulldim", "center",
"points", "lines", "linessimufactor",
"linesimustep", "layers", "grid"};
const char * mpp[mppN] = {"n_estim_E", // n to determine E by simulation
"intensity",
// "refradius_factor",
"about_zero"
// "plus",
// "samplingdist", "samplingr",// MPP_cc
//"p", // Gneiting_cc
};
const char * hyper[hyperN] = {"superpos", "maxlines", "mar_distr",
"mar_param"};
const char * extreme[extremeN] =
{"max_gauss", "maxpoints", "xi",
"density_ratio", "check_every", "flat",
"min_n_zhou", "max_n_zhou", "eps_zhou",
"mcmc_zhou"};
const char * br[brN] =
{"maxtrendmem", "meshsize",
"vertnumber", "optim_mixed", "optim_mixed_tol",
"optim_mixed_maxpoints", "variobound", "deltaAM", "corr_factor"};
const char * distr[distrN] =
{"safety", "minsteplen", "maxsteps",
"parts", "maxit", "innermin",
"outermax", "mcmc_n", "repetitions"};
const char * fit[fitN] =
{"bin_dist_factor", "upperbound_scale_factor", "lowerbound_scale_factor", "lowerbound_scale_ls_factor","upperbound_var_factor","lowerbound_var_factor",
"lowerbound_sill", "scale_max_relative_factor", "minbounddistance",
"minboundreldist", "approximate_functioncalls", "refine_onborder",
"minmixedvar", "maxmixedvar", "solvesigma",
"bc_lambda_lb", "bc_lambda_ub", "use_naturalscaling",
"bins", "nphi", "ntheta",
"ntime", "sill", "only_users",
"optim_var_elimination", "shortnamelength", "use_spam",
"split", "scale_ratio", "critical",
"n_crit", "max_neighbours", "splitn_neighbours",
"splitfactor_neighbours", "smalldataset", "min_diag",
"reoptimise", "optimiser", "algorithm",
"likelihood", "ratiotest_approx", "split_refined",
"cross_refit"
};
const char * empvario[empvarioN] =
{"phi0", "theta0", "tol0",
"pseudovariogram", "fft"};
const char * gui[guiN] =
{"alwaysSimulate", "simu_method", "size"};
const char *graphics[graphicsN]=
{"always_close_screen" ,"grPrintlevel", "height",
"increase_upto", "always_open_screen", "file",
"onefile", "filenumber", "resolution"};
const char *registers[registersN] =
{"register", "interpolregister", "condregister",
"errregister", "guiregister"};
const char * internals[internalN] = {
// Achtung ! warn parameter werden nicht pauschal zurueckgesetzt
"warn_oldstyle", "warn_newstyle", "warn_newAniso",
"warn_ambiguous", "warn_normal_mode", "warn_mode",
"stored.init", "warn_scale", "warn_on_grid",
"warn_coordinates", "warn_new_definitions", "warn_aspect_ratio"
};
const char *coords[coordsN] =
{ "xyz_notation", "coordinate_system",
"new_coordunits", "coordunits", "varunits",
"varnames", "coordnames" // for data.frames
};
const char * special[specialN] = {"multicopies"};
const char * obsolete[obsoleteN] =
{ "oldstyle", "newstyle", "newAniso",
"ambiguous", "normal_mode"
};
const char **all[] = {general, gauss, krige, CE, direct, // markov,
pnugget, sequ, spectral, pTBM, mpp,
hyper, extreme, br, distr, fit,
empvario, gui, graphics, registers, internals,
coords, special, obsolete};
int allN[] = {generalN, gaussN, krigeN, CEN, directN,// markovN,
pnuggetN, sequN, spectralN, pTBMN, mppN,
hyperN, extremeN, brN, distrN, fitN,
empvarioN, guiN, graphicsN, registersN, internalN,
coordsN, specialN, obsoleteN};
void RelaxUnknownRFoption(int *relax) {
RELAX_UNKNOWN_RFOPTION = (bool) *relax;
}
void setparameter(SEXP el, char *prefix, char *mainname, bool isList) {
int i,j,ii;
char msg[200], name[200];
isList &= GLOBAL.general.asList;
sprintf(name, "%s%s%s", prefix, strlen(prefix)==0 ? "" : ".", mainname);
// print("set param: %s.%s.%s\n",prefix, strlen(prefix)==0 ? "" : ".", mainname);
// print("relax=%d\n", RELAX_UNKNOWN_RFOPTION);
if (mainname[0] >= 'A' && mainname[0] <= 'Z' && RELAX_UNKNOWN_RFOPTION) {
if (PL > PL_IMPORTANT)
PRINTF("'%s' is not considered as an RFoption, but will be passed to evaluate the model formula.\n", mainname);
return;
}
i = Match(prefix, prefixlist, prefixN);
if (i<0) {
sprintf(msg, "option unknown (unknown prefix: %s)", prefix);
ERR(msg);
}
// print("%d %d pref='%s' %s relax=%d\n", i, j, prefix, mainname, RELAX_UNKNOWN_RFOPTION);
if (i==0) {
#define MinNameLength 3
int trueprefixN = prefixN - 1;
for (i=0; i < trueprefixN; i++) {
// printf("%s\n", prefixlist[ii+1]);
j = Match(mainname, all[i], allN[i]);
if (j != NOMATCHING) break;
}
// if (j>=0) printf("%s %s %d %d=%d %d\n", prefixlist[i+1], all[i][j], j,
// strlen(mainname), strlen(all[i][j]),
// strcmp(mainname, all[i][j]) != 0); else
// printf("not found");
bool ok = j >= 0;
if (j != NOMATCHING && (!ok || strcmp(mainname, all[i][j]) != 0)) {
for (ii=i + 1; ii < trueprefixN; ii++) {
int jj = Match(mainname, all[ii], allN[ii]);
if (jj >= 0) {
if ((ok = strcmp(mainname, all[ii][jj]) == 0)) {
i = ii;
j = jj;
break;
}
}
}
if (!ok) {
sprintf(msg, "%s '%s' cannot be uniquely identified.",
RFOPTIONS, name);
ERR(msg);
}
}
} else {
i--; // since general has to prefixed.
j = Match(mainname, all[i], allN[i]);
}
if (j<0) {
if (j==-1) sprintf(msg, "Unknown option '%s'.", name);
else sprintf(msg, "Multiple matching for '%s'.", name);
ERR(msg);
}
switch(i) {
case 0: {// general
general_param *gp;
gp = &(GLOBAL.general);
switch(j) {
case 0: {
int old_mode = gp->mode;
SetDefaultModeValues(old_mode,
gp->mode = GetName(el, name, MODENAMES, nr_modes,
normal));
break;
}
case 1: {
int threshold = 1000; //PL_ERRORS;
gp->Rprintlevel = INT;
PL = gp->Cprintlevel =
gp->Rprintlevel <= threshold ? gp->Rprintlevel : threshold;
}
break;
case 2: {
bool storing = LOG;
// print("before setting storing %d %d\n", storing, KEY[0].simu.active);
if (length(el) > 1) {
if (!storing) {
int nr = Integer(el, (char*) "storing (register)", 1);
if (nr != NA_INTEGER) {
// print("deleting register %d\n", nr);
if (nr<0 || nr>MODEL_MAX)
ERR1("%s: number for register is out of range", RFOPTIONS);
COV_DELETE(KEY + nr);
// print("xstoring = %d\n", storing);
}
if (length(el) >=3) {
nr = Integer(el, (char*) "storing (model)", 2);
if (nr != NA_INTEGER) {
if (nr>=0 && nr<=MODEL_MAX && KEY[nr] != NULL)
COV_DELETE(KEY + nr);
}
}
}
//
// print("hereX %d %d %d\n", storing, length(el), KEY[0].simu.active);
} else {
if (!storing) {
// delete all keys
for (ii=0; ii<=MODEL_MAX; ii++) {
if (KEY[ii]!=NULL) COV_DELETE(KEY + ii);
}
//
}
//
// print("hereR %d %d\n", storing, KEY[0].simu.active);
}
//
// print("here %d\n", storing);
gp->storing = storing;}
break;
case 3: gp->skipchecks = LOG; break;
case 4: gp->every = POS0INT; break;
case 5: gp->gridtolerance = NUM; break;
case 6: gp->pch = CHR; break;
case 7:
int n;
n =INT;
if (n!=0 && n!=1 && n!=2 && n!=3)
ERR("PracticalRange out of range. It should be TRUE or FALSE.");
NS = gp->naturalscaling = n;
break;
case 8: gp->sp_conform = LOG; break;
case 9: PL = gp->Cprintlevel = INT; break;
case 10: gp->exactness = NUM; break;
case 11: {
int old[MAXINVERSIONS],
l = length(el);
if (l > MAXINVERSIONS) ERR("matrix_inversion: vector too long");
for (ii=0; ii<l; ii++) {
old[ii] = gp->matrix_inversion[ii];
gp->matrix_inversion[ii] = Integer(el, name, ii);
if (gp->matrix_inversion[ii] < 0 || gp->matrix_inversion[ii] > 2) break;
}
if (ii<l) {
for (; ii>=0; ii--) gp->matrix_inversion[ii] = old[ii];
ERR("values of matrix_inversion out of range");
} else {
for (; ii<MAXINVERSIONS; ii++) gp->matrix_inversion[ii] = -1;
}
break;
}
case 12: gp->matrixtolerance = NUM; break;
case 13: gp->allowdist0 = LOG; break;
case 14: gp->na_rm_lines = LOG; break;
case 15: gp->vdim_close_together = LOG;
if (gp->vdim_close_together) {
gp->vdim_close_together = false;
ERR1("'%s' not programmed yet", general[GENERAL_CLOSE]);
}
break;
case 16: gp->expected_number_simu = POS0INT; break;
case 17: gp->seed = Integer(el, name, 0, true); break;
case 18: gp->detailed_output = LOG; break;
case 19: gp->asList = LOG; break;
case 20: gp->Ttriple = INT; break;
break;
default: BUG;
}}
break;
case 1: { // gauss
gauss_param *gp;
gp = &(GLOBAL.gauss);
switch(j) {
case 0: gp->paired = LOG; break;
case 1: gp->stationary_only = NUM; break;
case 2: gp->approx_zero = POS0NUM; break;
case 3: gp->direct_bestvariables = POS0INT; break;
case 4: gp->loggauss = LOG; break;
default: BUG;
}}
break;
case 2: { // krige
krige_param *kp;
char ret;
kp = &(GLOBAL.krige);
switch(j) {
case 0:
ret = CHR;
// print("%d: %d %d %d %d; %d %d %d >%s<\n",
// ret , 'O', 'S', 'I', 'A',
// TYPEOF(el), CHARSXP, STRSXP, CHAR(STRING_ELT(el,0))
// );
if (ret != 'A' && // auto
ret != 'S' && // simple
ret != 'O' && // ordinary
ret != 'M' && // mean
ret != 'U' && // universal
ret != 'I' // intrinsic
) {
ERR("krige.method not in S)imple O)rdinary U)niversal I)ntrinsic and A)utomatic");
}
kp->method = ret;
break;
case 1: kp->ret_variance = LOG; break;
case 2: kp->locmaxn = POS0INT; break;
case 3: {
int old[3];
if (length(el) < 3) ERR("krige.locsplitn must have 3 components");
for (ii=0; ii<3; ii++) {
old[ii] = kp->locsplitn[ii];
kp->locsplitn[ii] = Integer(el, name, ii);
}
if (kp->locsplitn[0] < kp->locsplitn[2] ||
kp->locsplitn[2] < kp->locsplitn[1]) {
for (ii=0; ii<3; ii++) kp->locsplitn[i] = old[ii];
error("locsplitn[1] >= locsplitn[3] >= locsplitn[2] not satisfied");
}
break;
}
case 4: kp->locsplitfactor = POS0INT; break;
case 5: kp->fillall = LOG; break;
case 6: kp->cholesky = LOG; break;
default: BUG;
}}
break;
case 3: // CE
CE_set(el, j, name, &(GLOBAL.ce), isList);
break;
case 4: { //direct
direct_param *dp;
dp = &(GLOBAL.direct);
switch(j) {
case 0: int method;
method = INT;
if (method<0 || method>=(int) NoFurtherInversionMethod){
warning("given inversion method out of range; ignored\n");
} else dp->inversionmethod= (InversionMethod) method;
break;
case 1: dp->svdtolerance = NUM; break;
case 2: dp->maxvariables = POS0INT; break;
default: BUG;
}}
break;
case 5: {// pnugget,
nugget_param *np;
np = &(GLOBAL.nugget) ;
switch(j) {
case 0: np->tol = NUM;
if (np->tol < 0) {
if (PL>=PL_IMPORTANT) {
strcpy(msg, "negative tolerance for distance in nugget covariance not allowed; set to zero");
warning(msg);
}
np->tol = 0.0;
}
break;
default: BUG;
}}
break;
case 6: {//sequ,
sequ_param *sp;
sp = &(GLOBAL.sequ) ;
switch(j) {
case 0: sp->max = POS0INT; break;
case 1: sp->back = INT; if (sp->back < 1) sp->back=1; break;
case 2: sp->initial = INT; break;
default: BUG;
}}
break;
case 7: { // spectral,
spectral_param *sp;
sp = &(GLOBAL.spectral) ;
switch(j) {
case 0: Integer(el, name, sp->lines, MAXTBMSPDIM); break;
case 1: sp->grid = LOG; break;
case 2: sp->ergodic = LOG; break;
case 3: sp->prop_factor = POS0NUM;
if (sp->prop_factor <= 0.1) {
sp->prop_factor=0.1;
WARNING1("'%s' less than 0.1. Set to 0.1.",
spectral[SPECTRAL_PROPFACTOR]);
}
break;
case 4: sp->sigma = NUM; break;
default: BUG;
}}
break;
case 8: {// TBM
tbm_param *tp;
tp = &(GLOBAL.tbm) ;
switch(j) {
case 0: tp->tbmdim = INT; break;
case 1: tp->fulldim = POS0INT; break;
case 2: Real(el, name, tp->center, MAXTBMSPDIM); break;
case 3: tp->points = POS0INT; break;
case 4: Integer(el, name, tp->lines, MAXTBMDIM); break;
case 5:
tp->linesimufactor = Real(el, prefix, 0);
if (tp->linesimufactor < 0.0) {
sprintf(msg,"Both %s.linesimufactor and %s.linesimustep must be non-negative\n", prefix, prefix);
warning(msg);
tp->linesimufactor = 0.0;
}
if (tp->linesimufactor>0.0 && tp->linesimustep>0.0) tp->linesimustep=0.0;
break;
case 6:
tp->linesimustep = Real(el, prefix, 0);
if (tp->linesimustep < 0.0) {
sprintf(msg,"Both %s.linesimufactor and %s.linesimustep must be non-negative\n", prefix, prefix);
warning(msg);
tp->linesimustep = 0.0;
}
if (tp->linesimufactor>0.0 && tp->linesimustep>0.0)
tp->linesimufactor=0.0;
break;
case 7:
tp->layers = Real(el, prefix, 0);
break;
case 8:
tp->grid = LOG; break;
default: BUG;
}}
break;
case 9: {// mpp,
mpp_param *mp;
mp = &(GLOBAL.mpp);
switch(j) {
case 0: mp->n_estim_E = POS0INT; break;
case 1: Real(el, name, mp->intensity, MAXMPPDIM); break;
// case 2: mp->refradius_factor = POS0NUM; break;
case 2: mp->about_zero = POS0NUM; break;
default: BUG;
}}
break;
case 10: {//hyper,
hyper_param *hp;
hp = &(GLOBAL.hyper);
switch(j) {
case 0: hp->superpos = POS0INT; break;
case 1: hp->maxlines = POS0INT; break;
case 2: hp->mar_distr = INT; break;
case 3: hp->mar_param = NUM; break;
default: BUG;
}}
break;
case 11: {// extreme
extremes_param *ep;
ep = &(GLOBAL.extreme);
switch(j) {
case 0: ep->standardmax = POS0NUM; break;
case 1: ep->maxpoints = POS0INT; break;
case 2: ep->GEV_xi = NUM; break;
case 3: ep->density_ratio = POS0NUM; break;
case 4: ep->check_every = POS0INT; break;
case 5: ep->flat = INT;
if (ep->flat < -1 || ep->flat > 1)
ERR1("illegal value for '%s'", extreme[EXTREME_FLAT]);
if (ep->flat != FALSE)
ERR1("currently only '%s=FALSE' allowed", extreme[EXTREME_FLAT]);
// Programmierfehler in Huetchen.c
break;
case 6: ep->min_n_zhou = POSINT; break;
case 7: ep->max_n_zhou = POSINT; break;
case 8: ep->eps_zhou = POSNUM; break;
case 9: ep->mcmc_zhou = POSINT; break;
default: BUG;
}}
break;
case 12 : { // br
br_param *ep;
ep = &(GLOBAL.br);
switch(j) {
case 0: ep->BRmaxmem = POSINT; break;
case 1: ep->BRmeshsize = POSNUM; break;
case 2: ep->BRvertnumber = POSINT; break;
case 3: ep->BRoptim = POS0INT; break;
case 4: ep->BRoptimtol = POS0NUM; break;
case 5: ep->BRoptimmaxpoints = POS0INT; break;
case 6: ep->variobound = NUM; break;
case 7: ep->deltaAM = POSINT; break;
case 8: ep->corr_factor = POSNUM; break; // in [0,1]
default: BUG;
}}
break;
case 13 : {// distr
distr_param *ep;
ep = &(GLOBAL.distr);
switch(j) {
case 0: ep->safety=POSNUM; break;
case 1: ep->minsteplen=POS0NUM; break;
case 2: ep->maxsteps=POSINT; break;
case 3: ep->parts=POSINT; break;
case 4: ep->maxit=POSINT; break;
case 5: ep->innermin=POSNUM; break;
case 6: ep->outermax=POSNUM; break;
case 7: ep->mcmc_n=POSNUM; break;
case 8: ep->repetitions=POSNUM; break;
default: BUG;
}}
break;
case 14: { // fit
fit_param *ef;
ef = &(GLOBAL.fit);
switch(j) {
case 0: ef->bin_dist_factor = POS0NUM; break;
case 1: ef->upperbound_scale_factor = POS0NUM; break;
case 2: ef->lowerbound_scale_factor = POS0NUM; break;
case 3: ef->lowerbound_scale_LS_factor = POS0NUM; break;
case 4: ef->upperbound_var_factor = POS0NUM; break;
case 5: ef->lowerbound_var_factor = POS0NUM; break;
case 6: ef->lowerbound_sill = POS0NUM; break;
case 7: ef->scale_max_relative_factor = POS0NUM; break;
case 8: ef->minbounddistance = POS0NUM; break;
case 9: ef->minboundreldist = POS0NUM; break;
case 10: ef->approximate_functioncalls = POS0INT; break;
case 11: ef->refine_onborder = LOG; break;
case 12: ef->minmixedvar = POS0NUM; break;
case 13: ef->maxmixedvar = POS0NUM; break;
case 14: ef->solvesigma = NUM; break;
case 15: ef->BC_lambdaLB = NUM; break;
case 16: ef->BC_lambdaUB = NUM; break;
case 17: ef->use_naturalscaling = LOG; break;
case 18: ef->bins = POS0INT; break;
case 19: ef->nphi = POS0INT; break;
case 20: ef->ntheta = POS0INT; break;
case 21: ef->ntime = POS0INT; break;
case 22: ef->sill = POS0NUM; break;
case 23: ef->onlyuser = LOG; break;
case 24: ef->optim_var_estim =
GetName(el, name, OPTIM_VAR_NAMES, nOptimVar); ; break;
case 25: { // mle
ii=POS0INT;
if (ii==0) { ii = 1; warning("shortnamelength set to 1"); }
if (ii>255) { ii = 255; warning("shortnamelength set to 255"); }
ef->lengthshortname=ii;
}
break;
case 26: ef->usespam = NUM; break;
case 27: ef->split = LOG; break;
case 28: ef->scale_ratio = NUM; break;
case 29: ef->critical = INT; break;
case 30: ef->n_crit = POS0INT; break;
case 31: ef->locmaxn = POS0INT; break;
case 32: {
if (length(el) < 3) ERR("fit.locsplitn must have 3 components");
for (ii=0; ii<3; ii++)
ef->locsplitn[ii] = Integer(el, name, ii);
break;
}
case 33: ef->locsplitfactor = POS0INT; break;
case 34: ef->smalldataset = POS0INT; break;
case 35: ef->min_diag = NUM; break;
case 36: ef->reoptimise = LOG; break;
case 37: ef->optimiser = GetName(el, name, OPTIMISER_NAMES, nOptimiser, 0);
break;
case 38:
switch(ef->optimiser) {
case 3 : ef->algorithm = GetName(el, name, NLOPTR_NAMES, nNLOPTR);
break;
default: ef->algorithm = -1;
}
break;
case 39: ef->likelihood =
GetName(el, name, LIKELIHOOD_NAMES, nLikelihood); ; break;
case 40: ef->ratiotest_approx = LOG; break;
case 41: ef->split_refined = LOG; break;
case 42: ef->cross_refit = LOG; break;
default: BUG;
}}
break;
case 15: { // empvario
empvario_param *ep;
ep = &(GLOBAL.empvario);
switch(j) {
case 0: ep->phi0=NUM; break;
case 1: ep->theta0=NUM; break;
case 2: ep->tol=NUM; break;
case 3: ep->pseudovariogram = LOG; break;
case 4: ep->fft = LOG; break;
default: BUG;
}}
break;
case 16: { // gui
gui_param *gp;
gp = &(GLOBAL.gui);
switch(j) {
case 0: gp->alwaysSimulate = LOG; break;
case 1:
gp->method = GetName(el, name, METHODNAMES, Forbidden + 1, Nothing);
break;
case 2: {
int sizedummy[2];
if (length(el) != 2) ERR1("length of '%s' must be 2", gui[GUI_SIZE]);
Integer(el, name, sizedummy, 2);
for (ii=0; ii<2; ii++) {
if (sizedummy[ii] <= 1)
ERR("grid in RFgui must contain at least 2 points");
}
for (ii=0; ii<2; ii++) { gp->size[ii] = sizedummy[ii]; }
}
break;
default: BUG;
}}
break;
case 17: { // graphics
graphics_param *gp = &(GLOBAL.graphics);
switch(j) {
case 0 : gp->always_close = LOG; break;
case 1 : gp->PL = INT; break;
case 2 : gp->height = NUM; break;
case 3 : {
int uptodummy[2];
if (length(el) != 2)
ERR1("length of '%s' must be 2", graphics[GRAPHICS_UPTO]);
Integer(el, name, uptodummy, 2);
for (ii=0; ii<2; ii++) {
if (uptodummy[ii] <= 0) ERR("increase_upto must be positive");
}
for (ii=0; ii<2; ii++) { gp->increase_upto[ii] = uptodummy[ii]; }
}
break;
case 4 : gp->always_open = INT;
break;
case 5 : if (!isList) {
char old[100];
strcopyN(old, gp->filename, 100);
STR(gp->filename, 100);
if (!gp->onefile && strcmp(gp->filename, old) !=0) gp->number = 0;
}
break;
case 6 : if (!isList) {
bool onefile = gp->onefile;
gp->onefile = LOG;
if (!gp->onefile && onefile) gp->number = 0;
} break;
case 7 : if (!isList) {
gp->number = INT;
}
break;
case 8 : gp->resolution = POSNUM; break;
default: BUG;
}}
break;
/*
case 20: { // empvario
empvario_param *ep;
ep = &(GLOBAL.empvario);
switch(j) {
case 0:
default: ERR("unknown option (empvario)");
}}
break;
*/
case 18 : {
registers_param *rp = &(GLOBAL.registers);
switch(j) {
case 0: { // simu
int keynr = INT;
if ((keynr<0) || (keynr>MODEL_MAX)) ERR("register number out of range");
rp->keynr=keynr; }
break;
case 1: { // interpol
int keynr;
keynr = INT;
if ((keynr<0) || (keynr>MODEL_MAX))
ERR("interpolregister number out of range");
rp->interpolregister=keynr;}
break;
case 2: { // cond
int keynr;
keynr = INT;
if ((keynr<0) || (keynr>MODEL_MAX))
ERR("condregister number out of range");
rp->condregister=keynr;}
break;
case 3: { // err
int keynr;
keynr = INT;
if ((keynr<0) || (keynr>MODEL_MAX))
ERR("errregister number out of range");
rp->errregister=keynr;}
break;
case 4: { // gui
int keynr;
keynr = INT;
if ((keynr<0) || (keynr>=MODEL_MAX))
ERR("guiregister number out of range");
rp->guiregister=keynr;}
break;
default: BUG;
}}
break;
case 19: {
internal_param *wp = &(GLOBAL.internal);
// ACHTUNG internal wird nicht pauschal zurueckgesetzt !
if (!isList) {
switch(j) {
case 0: wp->warn_oldstyle = LOG; break;
case 1: wp->warn_newstyle = LOG; break;
case 2: wp->warn_Aniso = LOG; break;
case 3: wp->warn_ambiguous = LOG; break;
case 4: wp->warn_normal_mode = LOG; break;
case 5: wp->warn_mode = LOG; break;
case 6: wp->stored_init = LOG; break;
case 7: wp->warn_scale = LOG; break;
case 8: wp->warn_coordinates = LOG; break;
case 9: wp->warn_on_grid = LOG; break;
case 10: wp->warn_new_definitions = LOG; break;
case 11: wp->warn_aspect_ratio = LOG; break;
default: BUG;
}
} else {
if (j==10) wp->warn_on_grid = LOG;
}
}
break;
case 20: {
coords_param *cp = &(GLOBAL.coords);
switch(j) {
case 0: cp->xyz_notation = INT; break;
case 1: cp->coord_system =
(coord_sys_enum) GetName(el, name, COORD_SYS_NAMES, nr_coord_sys,
coord_auto);
break;
case 2: getUnits(el, name, cp->newunits, NULL);
break;
case 3: getUnits(el, name, cp->curunits, isList ? NULL : cp->newunits);
break;
case 4: getUnits(el, name, cp->varunits, NULL);
break;
case 5: {
SEXPTYPE type = TYPEOF(el);
//printf("type=%d %d %d %d\n", type, INTSXP, REALSXP, LGLSXP);
if (type == INTSXP || type == REALSXP || type == LGLSXP) {
Integer2(el, name, cp->data_idx);
cp->data_nr_names = 0;
} else {
String(el, name, cp->data_names);
cp->data_nr_names = length(el);
}
}
break;
case 6: {
SEXPTYPE type = TYPEOF(el);
if (type == INTSXP || type == REALSXP || type == LGLSXP) {
Integer2(el, name, cp->x_idx);
cp->x_nr_names = 0;
} else {
String(el, name, cp->x_names);
cp->x_nr_names = length(el);
}
}
break;
default: BUG;
}}
break;
case 21: {
special_param *sp = &(GLOBAL.special);
switch(j) {
case 0: sp->multcopies = POSINT;
break;
default: BUG;
}}
break;
case 22: { // obsolete
internal_param *wp = &(GLOBAL.internal);
switch(j) {
case 0: wp->warn_oldstyle = LOG; break;
case 1: wp->warn_newstyle = LOG; break;
case 2: wp->warn_Aniso = LOG; break;
case 3: wp->warn_ambiguous = LOG; break;
case 4: wp->warn_normal_mode = LOG; break;
case 5: wp->warn_mode = LOG; break;
default: BUG;
}}
break;
default: BUG;
}
/*
case 6: {// markov,
markov_param *mp;
mp = &(GLOBAL.markov) ;
switch(j) {
case 0: mp->neighbours= INT;
if (mp->neighbours < 2) {
if (PL>=PL_ IMPORTANT) {
warning("minimal neighbourhood for Markov is 2"); }
mp->neighbours = 2;
} else if (mp->neighbours > 3) {
if (PL>=PL_ IMPORTANT) {
warning("maximal neighbourhood for Markov is 3"); }
mp->neighbours = 3;
}
break;
case 1: mp->precision = INT; break;
case 2: mp->cyclic = INT; break;
case 3: mp->maxmem = POS0INT; break;
default: ERR("unknown option for 'markov'");
}}
break;
*/
}
SEXP ExtendedInteger(double x) {
return ScalarInteger(R_FINITE(x) ? x : NA_INTEGER);
}
SEXP ExtendedBoolean(double x) {
return ScalarLogical(ISNAN(x) ? NA_LOGICAL : x != 0.0);
}
SEXP getRFoptions() {
SEXP list, names, sublist[prefixN-1], subnames[prefixN-1];
int i, k = 0;
char x[2]=" ";
int trueprefixN = prefixN - 1 - 1;// general has two options for prefixes
// and #22 obsolete is not shown
// cov_fct *C = CovList + cov->nr;
PROTECT(list = allocVector(VECSXP, trueprefixN));
PROTECT(names = allocVector(STRSXP, trueprefixN));
for (i=0; i<trueprefixN; i++) {
if (strcmp(prefixlist[i+1], "obsolete") == 0) continue;
SET_STRING_ELT(names, i, mkChar(prefixlist[i+1]));
PROTECT(sublist[i] = allocVector(VECSXP, allN[i]));
PROTECT(subnames[i] = allocVector(STRSXP, allN[i]));
int endfor = allN[i];
for (k=0; k<endfor; k++) {
// print("%d %d %s$%s\n", i, k, prefixlist[i+1], all[i][k]);
SET_STRING_ELT(subnames[i], k, mkChar(all[i][k]));
}
}
#define ADD(ELT) SET_VECTOR_ELT(sublist[i], k++, ELT)
#define ADDCHAR(ELT) x[0] = ELT; ADD(ScalarString(mkChar(x)));
i = 0; {
// printf("OK %d\n", i);
k = 0;
general_param *p = &(GLOBAL.general);
ADD(ScalarString(mkChar(MODENAMES[p->mode])));
ADD(ScalarInteger(p->Rprintlevel));
ADD(ScalarLogical(p->storing));
ADD(ScalarLogical(p->skipchecks));
ADD(ScalarInteger(p->every));
ADD(ScalarReal(p->gridtolerance));
ADDCHAR(p->pch);
if (p->naturalscaling==0 || p->naturalscaling==1)
ADD(ScalarLogical(p->naturalscaling));
else
ADD(ScalarInteger(p->naturalscaling));
ADD(ScalarLogical(p->sp_conform));
ADD(ScalarInteger(p->Cprintlevel));
ADD(ExtendedBoolean(p->exactness));
int nn, n_inv=0;
for (nn=0; nn<MAXINVERSIONS; nn++) n_inv += p->matrix_inversion[nn] >= 0;
SET_VECTOR_ELT(sublist[i], k++, Int(p->matrix_inversion, n_inv, n_inv));
ADD(ScalarReal(p->matrixtolerance));
ADD(ScalarLogical(p->allowdist0));
ADD(ScalarLogical(p->na_rm_lines));
ADD(ScalarLogical(p->vdim_close_together));
ADD(ScalarInteger(p->expected_number_simu));
ADD(ScalarInteger(p->seed));
ADD(ScalarLogical(p->detailed_output));
ADD(ScalarLogical(p->asList));
ADD(ScalarLogical(p->Ttriple == NA_INTEGER ? NA_LOGICAL
: p->Ttriple != 0));
}
// printf("OK %d\n", i);
i++; {
k = 0;
gauss_param *p = &(GLOBAL.gauss);
// nachfolgend sollte immer >= 0 sein
ADD(ScalarLogical(p->paired));
ADD(ExtendedBoolean(p->stationary_only));
ADD(ScalarReal(p->approx_zero));
ADD(ScalarInteger(p->direct_bestvariables));
ADD(ScalarLogical(p->loggauss));
}
i++; {
k = 0;
krige_param *p = &(GLOBAL.krige);
ADDCHAR(p->method);
ADD(ScalarLogical(p->ret_variance));
ADD(ScalarInteger(p->locmaxn));
SET_VECTOR_ELT(sublist[i], k++, Int(p->locsplitn, 3, 3));
ADD(ScalarInteger(p->locsplitfactor));
ADD(ScalarLogical(p->fillall));
ADD(ScalarLogical(p->cholesky));
}
i++; {
k = 0;
ce_param *p = &(GLOBAL.ce);
ADD(ScalarLogical(p->force));
SET_VECTOR_ELT(sublist[i], k++, Num(p->mmin, MAXCEDIM, MAXCEDIM));
ADD(ScalarInteger(p->strategy));
ADD(ScalarReal(p->maxGB));
ADD(ScalarReal(p->maxmem));
ADD(ScalarReal(p->tol_im));
ADD(ScalarReal(p->tol_re));
ADD(ScalarInteger(p->trials));
ADD(ScalarLogical(p->useprimes));
ADD(ScalarLogical(p->dependent));
ADD(ScalarReal(p->approx_grid_step));
ADD(ScalarInteger(p->maxgridsize));
}
i++; {
k = 0;
direct_param *p = &(GLOBAL.direct);
ADD(ScalarInteger(p->inversionmethod));
ADD(ScalarReal(p->svdtolerance));
ADD(ScalarInteger(p->maxvariables));
}
i++; {
k = 0;
nugget_param *p = &(GLOBAL.nugget);
ADD(ScalarReal(p->tol));
// ADD(ScalarLogical(p->meth));
}
i++; {
k = 0;
sequ_param *p = &(GLOBAL.sequ);
ADD(ScalarInteger(p->max)) /* does not need Extended here */;
ADD(ScalarInteger(p->back));
ADD(ScalarInteger(p->initial));
}
i++; {
k = 0;
spectral_param *p = &(GLOBAL.spectral);
SET_VECTOR_ELT(sublist[i], k++, Int(p->lines, MAXTBMSPDIM,MAXTBMSPDIM));
ADD(ScalarLogical(p->grid));
ADD(ScalarLogical(p->ergodic));
ADD(ScalarReal(p->prop_factor));
ADD(ScalarReal(p->sigma));
}
i++; {
k = 0;
tbm_param *p = &(GLOBAL.tbm);
// nachfolgend sollte immer >= 0 sein
ADD(ScalarInteger(p->tbmdim));
ADD(ScalarInteger(p->fulldim));
SET_VECTOR_ELT(sublist[i], k++, Num(p->center, MAXTBMSPDIM, MAXTBMSPDIM));
ADD(ScalarInteger(p->points));
// ADD(p->method>=0 ? ScalarString(mkChar(METHODNAMES[p->method])) :
// R_NilValue);
SET_VECTOR_ELT(sublist[i], k++, Int(p->lines, MAXTBMDIM,MAXTBMDIM));
ADD(ScalarReal(p->linesimufactor));
ADD(ScalarReal(p->linesimustep));
ADD(ExtendedBoolean(p->layers));
ADD(ScalarLogical(p->grid));
}
i++; {
k = 0;
mpp_param *p = &(GLOBAL.mpp);
ADD(ScalarInteger(p->n_estim_E));
SET_VECTOR_ELT(sublist[i], k++,
Num(p->intensity, MAXMPPDIM ,MAXMPPDIM));
//ADD(ScalarReal(p->refradius_factor));
ADD(ScalarReal(p->about_zero));
// SET_VECTOR_ELT(sublist[i], k++, Num(p->plus, MAXMPPDIM ,MAXMPPDIM));
// ADD(ScalarReal(p->approxzero));
// ADD(ScalarReal(p->samplingdist));
// ADD(ScalarReal(p->samplingr));
// ADD(ScalarReal(p->p));
}
i++; {
k = 0;
hyper_param *p = &(GLOBAL.hyper);
ADD(ScalarInteger(p->superpos));
ADD(ScalarInteger(p->maxlines));
ADD(ScalarInteger(p->mar_distr));
ADD(ScalarReal(p->mar_param));
}
i++; {
k = 0;
extremes_param *p = &(GLOBAL.extreme);
ADD(ScalarReal(p->standardmax));
ADD(ScalarInteger(p->maxpoints));
ADD(ScalarReal(p->GEV_xi));
ADD(ScalarReal(p->density_ratio));
ADD(ScalarInteger(p->check_every));
ADD(p->flat == 0 || p->flat == 1 ? ScalarLogical(p->flat) :
ScalarInteger(p->flat));
ADD(ScalarInteger(p->min_n_zhou));
ADD(ScalarInteger(p->max_n_zhou));
ADD(ScalarReal(p->eps_zhou));
ADD(ScalarInteger(p->mcmc_zhou));
}
i++; {
k = 0;
br_param *p = &(GLOBAL.br);
ADD(ScalarInteger(p->BRmaxmem));
ADD(ScalarReal(p->BRmeshsize));
ADD(ScalarInteger(p->BRvertnumber));
ADD(ScalarInteger(p->BRoptim));
ADD(ScalarReal(p->BRoptimtol));
ADD(ScalarInteger(p->BRoptimmaxpoints));
ADD(ScalarReal(p->variobound));
ADD(ScalarInteger(p->deltaAM));
ADD(ScalarReal(p->corr_factor));
}
i++; {
k = 0;
distr_param *p = &(GLOBAL.distr);
ADD(ScalarReal(p->safety));
ADD(ScalarReal(p->minsteplen));
ADD(ScalarInteger(p->maxsteps));
ADD(ScalarInteger(p->parts));
ADD(ScalarInteger(p->maxit));
ADD(ScalarReal(p->innermin));
ADD(ScalarReal(p->outermax));
ADD(ScalarInteger(p->mcmc_n));
ADD(ScalarInteger(p->repetitions));
}
i++; {
k = 0;
fit_param *p = &(GLOBAL.fit);
ADD(ScalarReal(p->bin_dist_factor));
ADD(ScalarReal(p->upperbound_scale_factor));
ADD(ScalarReal(p->lowerbound_scale_factor));
ADD(ScalarReal(p->lowerbound_scale_LS_factor));
ADD(ScalarReal(p->upperbound_var_factor));
ADD(ScalarReal(p->lowerbound_var_factor));
ADD(ExtendedBoolean(p->lowerbound_sill));
ADD(ScalarReal(p->scale_max_relative_factor));
ADD(ScalarReal(p->minbounddistance));
ADD(ScalarReal(p->minboundreldist));
ADD(ScalarInteger(p->approximate_functioncalls));
ADD(ScalarLogical(p->refine_onborder));
ADD(ScalarReal(p->minmixedvar));
ADD(ScalarReal(p->maxmixedvar));
ADD(ScalarReal(p->solvesigma));
ADD(ScalarReal(p->BC_lambdaLB));
ADD(ScalarReal(p->BC_lambdaUB));
ADD(ScalarLogical(p->use_naturalscaling));
ADD(ScalarInteger(p->bins));
ADD(ScalarInteger(p->nphi));
ADD(ScalarInteger(p->ntheta));
ADD(ScalarInteger(p->ntime));
ADD(ScalarReal(p->sill));
ADD(ScalarLogical(p->onlyuser));
ADD(ScalarString(mkChar(OPTIM_VAR_NAMES[p->optim_var_estim])));
ADD(ScalarInteger(p->lengthshortname));
ADD(ExtendedBoolean(p->usespam));
ADD(ScalarLogical(p->split));
ADD(ScalarReal(p->scale_ratio));
ADD(ScalarInteger(p->critical));
ADD(ScalarInteger(p->n_crit));
ADD(ScalarInteger(p->locmaxn));
SET_VECTOR_ELT(sublist[i], k++, Int(p->locsplitn, 3, 3));
ADD(ScalarInteger(p->locsplitfactor));
ADD(ScalarInteger(p->smalldataset));
ADD(ScalarReal(p->min_diag));
ADD(ScalarLogical(p->reoptimise));
ADD(p->optimiser>=0 ? ScalarString(mkChar(OPTIMISER_NAMES[p->optimiser]))
: R_NilValue);
ADD(p->algorithm < 0 ? R_NilValue :
ScalarString(mkChar(p->optimiser == 3 ? NLOPTR_NAMES[p->algorithm]
: "")
));
ADD(ScalarString(mkChar(LIKELIHOOD_NAMES[p->likelihood])));
ADD(ScalarLogical(p->ratiotest_approx));
ADD(ScalarLogical(p->split_refined));
ADD(ScalarLogical(p->cross_refit));
}
i++; {
k = 0;
empvario_param *p = &(GLOBAL.empvario);
ADD(ScalarReal(p->phi0));
ADD(ScalarReal(p->theta0));
ADD(ScalarReal(p->tol));
ADD(ScalarLogical(p->pseudovariogram));
ADD(ScalarLogical(p->fft));
}
i++; {
k = 0;
gui_param *p = &(GLOBAL.gui);
ADD(ScalarLogical(p->alwaysSimulate));
ADD(p->method>=0 ? ScalarString(mkChar(METHODNAMES[p->method]))
: R_NilValue);
SET_VECTOR_ELT(sublist[i], k++, Int(p->size, 2, 2));
}
i++; {
k = 0;
graphics_param *p = &(GLOBAL.graphics);
ADD(ScalarLogical(p->always_close));
ADD(ScalarInteger(p->PL));
ADD(ScalarReal(p->height));
SET_VECTOR_ELT(sublist[i], k++, Int(p->increase_upto, 2, 2));
ADD(ScalarLogical(p->always_open == NA_INTEGER ? NA_LOGICAL
: p->always_open != 0));
ADD(ScalarString(mkChar(p->filename)));
ADD(ScalarLogical(p->onefile));
ADD(ScalarInteger(p->number));
ADD(ScalarReal(p->resolution));
}
i++; {
k = 0;
registers_param *p = &(GLOBAL.registers);
ADD(ScalarInteger(p->keynr));
ADD(ScalarInteger(p->interpolregister));
ADD(ScalarInteger(p->condregister));
ADD(ScalarInteger(p->errregister));
ADD(ScalarInteger(p->guiregister));
}
i++; {
k = 0;
internal_param *p = &(GLOBAL.internal);
ADD(ScalarLogical(p->warn_oldstyle));
ADD(ScalarLogical(p->warn_newstyle));
ADD(ScalarLogical(p->warn_Aniso));
ADD(ScalarLogical(p->warn_ambiguous));
ADD(ScalarLogical(p->warn_normal_mode));
ADD(ScalarLogical(p->warn_mode));
ADD(ScalarLogical(p->stored_init));
ADD(ScalarLogical(p->warn_scale));
ADD(ScalarLogical(p->warn_coordinates));
ADD(ScalarLogical(p->warn_on_grid));
ADD(ScalarLogical(p->warn_new_definitions));
ADD(ScalarLogical(p->warn_aspect_ratio));
}
i++; {
k = 0;
coords_param *p = &(GLOBAL.coords);
ADD(ExtendedInteger(p->xyz_notation));
ADD(ScalarString(mkChar(COORD_SYS_NAMES[p->coord_system])));
ADD(UNITS(p->newunits));
ADD(UNITS(p->curunits));
ADD(UNITS(p->varunits));
if (p->data_nr_names == 0) {
SET_VECTOR_ELT(sublist[i], k++, Int(p->data_idx, 2, 2));
} else {
SET_VECTOR_ELT(sublist[i], k++,
String(p->data_names, p->data_nr_names,
p->data_nr_names));
}
if (p->x_nr_names == 0) {
SET_VECTOR_ELT(sublist[i], k++, Int(p->x_idx, 2, 2));
} else {
SET_VECTOR_ELT(sublist[i], k++,
String(p->x_names, p->x_nr_names,
p->x_nr_names));
}
}
i++; {
k = 0;
special_param *p = &(GLOBAL.special);
ADD(ScalarInteger(p->multcopies));
}
// print("%d %d\n", i, prefixN -1);
assert (i == trueprefixN - 1);
/*
ADD(ScalarReal(p->));
ADD(ScalarReal(p->));
ADD(ScalarInteger(p->));
ADD(ScalarInteger(p->));
ADD(ScalarLogical(p->));
ADD(ScalarLogical(p->));
ADD(ScalarString(p->));
ADD(ScalarString(p->));
*/
for (i=0; i<trueprefixN; i++) {
setAttrib(sublist[i], R_NamesSymbol, subnames[i]);
SET_VECTOR_ELT(list, i, sublist[i]);
}
setAttrib(list, R_NamesSymbol, names);
UNPROTECT(2 + 2 * trueprefixN);
return list;
}
void splitAndSet(SEXP el, char *name, bool isList) {
int i, len;
char msg[200];
char prefix[200], mainname[200];
// printf("splitandset\n");
len = strlen(name);
for (i=0; i < len && name[i]!='.'; i++);
sprintf(msg, "argument '%s' not valid\n", name);
if (i==0) ERR(msg);
if (i==len) {
strcpy(prefix, "");
strcopyN(mainname, name, 200);
} else {
strcopyN(prefix, name, i);
prefix[i] = '\0';
strcpy(mainname, name+i+1);
}
// printf("i=%d %d\n", i, len);
setparameter(el, prefix, mainname, isList);
// printf("ende\n");
}
SEXP RFoptions(SEXP options) {
int i, j, lenlist, lensub;
SEXP el, list, sublist, names, subnames;
char *name, *pref;
bool isList = false;
/*
In case of strange values of a parameter, undelete
the comment for PRINTF
*/
// PRINTF("start %f\n", GLOBAL.gauss.exactness);
options = CDR(options); /* skip 'name' */
if (options == R_NilValue) {
//PRINTF("before get %f\n", 1.);
list = getRFoptions();
// PRINTF("after get %f\n", 1);
return list;
}
name = (char*) (isNull(TAG(options)) ? "" : CHAR(PRINTNAME(TAG(options))));
if ((isList = strcmp(name, "LIST")==0)) {
list = CAR(options);
if (TYPEOF(list) != VECSXP)
ERR1("'LIST' needs as argument the output of '%s'", RFOPTIONS);
names = getAttrib(list, R_NamesSymbol);
lenlist = length(list);
for (i=0; i<lenlist; i++) {
int len;
pref = (char*) CHAR(STRING_ELT(names, i));
// print("%d %s warn.ambig=%d\n", i, pref, GLOBAL.warn.ambiguous);
sublist = VECTOR_ELT(list, i);
len = strlen(pref);
for (j=0; j < len && pref[j]!='.'; j++);
if (TYPEOF(sublist) == VECSXP && j==len) { // no "."
// so, general parameters may not be lists,
// others yes
lensub = length(sublist);
subnames = getAttrib(sublist, R_NamesSymbol);
for (j=0; j<lensub; j++) {
name = (char*) CHAR(STRING_ELT(subnames, j));
// print(" %d %s warn.ambig=%d\n", j, name, GLOBAL.warn.ambiguous);
// print("%d %d %s : %f %f\n", i, j, name,
// GLOBAL.gauss.exactness, GLOBAL.TBM.linesimustep);
//
//print(" %d %d pref=%s name=%s\n", i, j, pref, name);
setparameter(VECTOR_ELT(sublist, j), pref, name, isList);
}
} else {
splitAndSet(sublist, pref, isList);
}
}
// print("end1 %f\n", GLOBAL.TBM.linesimufactor);
} else {
for(i = 0; options != R_NilValue; i++, options = CDR(options)) {
el = CAR(options);
name = (char*) (isNull(TAG(options)) ? "" :CHAR(PRINTNAME(TAG(options))));
splitAndSet(el, name, isList);
}
// print("end2 %f\n", GLOBAL.gauss.exactness);
}
GLOBAL.general.asList = true;
return(R_NilValue);
}
void GetModelRegister(char **name, int* nr) {
*nr = Match(*name, REGNAMES, MODEL_MAX+1);
// print("%d\n", *nr);
if (*nr<0 || *nr > MODEL_MAX) error("name for model register unknown");
}
void MultiDimRange(int *model_nr, double *natscale) {
MultiDimRange(KEY[*model_nr], natscale);
}
SEXP countelements(SEXP Idx, SEXP N, SEXP Totparts) {
int i, *boxes,
*idx = INTEGER(Idx),
nbox = INTEGER(Totparts)[0],
n = INTEGER(N)[0];
SEXP Boxes;
PROTECT(Boxes = allocVector(INTSXP, nbox));
boxes = INTEGER(Boxes);
for (i=0; i<nbox; i++) boxes[i]= 0;
for (i=0; i<n; i++) {
boxes[idx[i]]++;
}
UNPROTECT(1);
return Boxes;
}
SEXP countneighbours(SEXP Xdim, SEXP Parts, SEXP Squarelength, SEXP Cumgridlen,
SEXP Boxes) {
int d, totcumlen, relstart, y,
nb[MAXGETNATSCALE], loc[MAXGETNATSCALE], e,
x = 0,
sum = 0,
sl = INTEGER(Squarelength)[0],
dim = INTEGER(Xdim)[0],
boundary = (sl - 1) / 2,
// total = cumgridlen[dim],
maxn = GLOBAL.krige.locmaxn,
*parts = INTEGER(Parts),
*cumgridlen = INTEGER(Cumgridlen),
nboxes = length(Boxes),
*boxes = INTEGER(Boxes);
assert(dim <= MAXGETNATSCALE);
SEXP Neighbours;
PROTECT(Neighbours = allocVector(INTSXP, nboxes));
int *neighbours = INTEGER(Neighbours);
totcumlen = 0;
for (d=0; d<dim; d++) {
loc[d] = -boundary;
nb[d] = 0;
totcumlen += cumgridlen[d];
//print("%d %d %d\n", d, totcumlen, cumgridlen[d]);
}
relstart = totcumlen * boundary;
d = 0;
while(d < dim) {
y = x - relstart;
// print("%d\n", x);
neighbours[x] = 0;
sum = e = 0;
while(e < dim) {
bool inside = true;
int j;
for (j=0; j<dim; j++) {
double abs = loc[j] + nb[j];
if (abs < 0 || abs>=parts[j]) {inside=false; break;}
}
if (inside) {
// print("inside %d (%d, %d)\n", y, loc[0], loc[1]);
sum += boxes[y];
neighbours[x]++;
}
e = 0;
loc[e]++;
y++;
while (loc[e] > boundary) {
loc[e] = -boundary;
y -= cumgridlen[e] * sl;
if (++e >= dim) break;
loc[e]++;
y += cumgridlen[e];
}
//print("e=%d\n", e);
}
// print("sum=%d maxn=%d (%d %d) %d %d parts=%d %d; %d %dl nei=%d\n",
// sum, maxn, nb[0], nb[1], totcumlen, relstart, parts[0], parts[1],
// cumgridlen[0], cumgridlen[1], neighbours[x]);
// assert(false);
if (sum > maxn) {
UNPROTECT(1);
return NILSXP;
}
d = 0;
nb[d]++;
x++;
while (nb[d] >= parts[d]) {
nb[d] = 0;
if (++d >= dim) break;
nb[d]++;
}
// print("d=%d (%d %d %d) [%d %d %d]\n", d, nb[0], nb[1], nb[2],
// parts[0], parts[1], parts[2]);
// assert(false);
}
UNPROTECT(1);
return Neighbours;
}
SEXP getelements(SEXP Idx, SEXP Xdim, SEXP N, SEXP Cumgridlen, SEXP Boxes) {
int i, err = NOERROR,
*idx = INTEGER(Idx),
dim = INTEGER(Xdim)[0],
n = INTEGER(N)[0],
*cumgridlen = INTEGER(Cumgridlen),
*boxes = INTEGER(Boxes),
total = cumgridlen[dim],
*count = NULL,
**elm = NULL;
SEXP subel = R_NilValue;
if ((elm = (int **) MALLOC(sizeof(int*) * total)) == NULL ||
(count = (int*) MALLOC(sizeof(int) * total)) == NULL) {
err = ERRORMEMORYALLOCATION;
goto ErrorHandling;
}
for (i=0; i<total; i++) elm[i] = NULL;
for (i=0; i<total; i++) {
// print("%d %d l=%d \n", i, total, boxes[i]);
if ((elm[i] = (int *) MALLOC(sizeof(int) * boxes[i])) == NULL) {
err = ERRORMEMORYALLOCATION;
goto ErrorHandling;
}
count[i] = 0;
}
for (i=0; i<n; i++) {
int k=idx[i];
elm[k][(count[k])++] = i + 1;
}
PROTECT(subel = allocVector(VECSXP, total));
for (i=0; i<total; i++) {
// print("%d %d %d\n", i, total, boxes[i]);
SEXP el;
int k,
end = boxes[i];
PROTECT(el = allocVector(INTSXP, boxes[i]));
for (k=0; k<end; k++) INTEGER(el)[k] = elm[i][k];
SET_VECTOR_ELT(subel, i, el);
UNPROTECT(1);
}
UNPROTECT(1);
ErrorHandling :
if (elm != NULL) {
for (i=0; i<total; i++) {
if (elm[i] != NULL) free(elm[i]);
}
free(elm);
}
if (count != NULL) free(count);
if (err!=NOERROR) XERR(err);
return subel;
}
SEXP getneighbours(SEXP Xdim, SEXP Parts, SEXP Squarelength,
SEXP Cumgridlen, SEXP Neighbours) {
int i, d, sum, totcumlen, relstart, x, y,
err = NOERROR,
nb[MAXGETNATSCALE], loc[MAXGETNATSCALE], e,
dim = INTEGER(Xdim)[0],
*parts = INTEGER(Parts),
sl = INTEGER(Squarelength)[0],
*cumgridlen = INTEGER(Cumgridlen),
*neighbours = INTEGER(Neighbours),
boundary = (sl - 1) / 2,
total = cumgridlen[dim],
** neighb = NULL;
SEXP subnei = R_NilValue;
if ( (neighb = (int **) MALLOC(sizeof(int*) * total)) == NULL) {
err = ERRORMEMORYALLOCATION;
goto ErrorHandling;
}
// print("OK %d\n", total);
for (i=0; i<total; i++) neighb[i] = NULL;
for (i=0; i<total; i++) {
// print("%d %d l=%d %d\n", i, total, neighbours[i]);
// R_CheckUserInterrupt();
if ((neighb[i] = (int *) MALLOC(sizeof(int) * neighbours[i])) == NULL) {
err = ERRORMEMORYALLOCATION;
goto ErrorHandling;
}
}
x = 0;
totcumlen = 0;
for (d=0; d<dim; d++) {
loc[d] = -boundary;
nb[d] = 0;
totcumlen += cumgridlen[d];
}
relstart = totcumlen * boundary;
d = 0;
while(d < dim) {
y = x - relstart;
sum = e = 0;
while(e < dim) {
bool inside = true;
int j;
for (j=0; j<dim; j++) {
double abs = loc[j] + nb[j];
if (abs < 0 || abs>=parts[j]) {inside=false; break;}
}
if (inside) {
neighb[x][sum] = y + 1;
sum++;
}
e = 0;
loc[e]++;
y++;
while (loc[e] > boundary) {
loc[e] = -boundary;
y -= cumgridlen[e] * sl;
if (++e >= dim) break;
loc[e]++;
y += cumgridlen[e];
}
}
d = 0;
nb[d]++;
x++;
while (nb[d] >= parts[d]) {
nb[d] = 0;
if (++d >= dim) break;
nb[d]++;
}
}
// print("heres\n");
PROTECT(subnei = allocVector(VECSXP, total));
for (i=0; i<total; i++) {
// print("%d %d %d %d\n", i, total, neighbours[i]);
R_CheckUserInterrupt();
SEXP nei;
PROTECT(nei = allocVector(INTSXP, neighbours[i]));
int k,
end = neighbours[i];
for (k=0; k<end; k++) INTEGER(nei)[k] = neighb[i][k];
SET_VECTOR_ELT(subnei, i, nei);
UNPROTECT(1);
}
UNPROTECT(1);
ErrorHandling :
if (neighb != NULL) {
for (i=0; i<total; i++) {
if (neighb[i] != NULL) free(neighb[i]);
}
free(neighb);
}
if (err!=NOERROR) XERR(err);
return subnei;
}
void DeleteKey(int *reg) {
COV_DELETE(KEY + *reg);
}
void isAuthor(int *is) {
#ifdef WIN32
*is = false;
#else
#define NCHAR 5
char host[5];
gethostname(host, NCHAR);
host[NCHAR-1] = '\0';
*is = strcmp("viti", host) == 0;
#endif
}
SEXP allintparam() {
cov_fct *C;
int n, i, np;
for (np=n=0; n<currentNrCov; n++) {
C = CovList + n;
//printf("\n%s ", C->nick);
for (i=0; i<C->kappas; i++) {
if (C->kappatype[i] == INTSXP) {
//printf("%s ", C->kappanames[i]);
np++;
}
}
}
SEXP x;
PROTECT (x = allocVector(STRSXP, np));
for (np=n=0; n<currentNrCov; n++) {
C = CovList + n;
for (i=0; i<C->kappas; i++) {
if (C->kappatype[i] == INTSXP)
SET_STRING_ELT(x, np++, mkChar(C->kappanames[i]));
}
}
UNPROTECT(1);
return x;
}
