https://github.com/ctlab/phantasus
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Tip revision: 3060d2b3ea45059741f3612cf8273a125315b3ac authored by Nitesh Turaga on 27 October 2020, 15:33:27 UTC
bump x.y.z version to odd y following creation of RELEASE_3_12 branch
Tip revision: 3060d2b
getGDS.Rd
% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/loadGEO.R
\name{getGDS}
\alias{getGDS}
\title{Load ExpressionSet from GEO Datasets}
\usage{
getGDS(name, destdir = tempdir(), mirrorPath = "https://ftp.ncbi.nlm.nih.gov")
}
\arguments{
\item{name}{String, containing GEO identifier of the dataset.
It should start with 'GSE' or 'GDS' and can include exact GPL
to annotate dataset, separated with dash ('-') from the identifier.}

\item{destdir}{Directory for caching loaded Series and GPL
files from GEO database.}

\item{mirrorPath}{URL string which specifies the source of matrices.}
}
\value{
ExpressionSet object wrapped in list, that was available by given
    in \code{name} variable GEO identifier.
}
\description{
\code{getGDS} return the ExpressionSet object corresponding
    to GEO Dataset identifier.
}
\examples{
getGDS('GDS4922')

}
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