https://github.com/RadioAstronomySoftwareGroup/pyuvdata
Tip revision: 0b1b091eeec941c6081327cfd1d65f689feafd8c authored by Paul La Plante on 08 August 2020, 00:16:05 UTC
Merge branch 'Smithsonian-submillimeter_array' into master
Merge branch 'Smithsonian-submillimeter_array' into master
Tip revision: 0b1b091
test_fhd_cal.py
# -*- mode: python; coding: utf-8 -*-
# Copyright (c) 2018 Radio Astronomy Software Group
# Licensed under the 2-clause BSD License
"""Tests for FHD_cal object."""
import pytest
import os
import numpy as np
from pyuvdata import UVCal
import pyuvdata.tests as uvtest
from pyuvdata.data import DATA_PATH
# set up FHD file list
testdir = os.path.join(DATA_PATH, "fhd_cal_data/")
testfile_prefix = "1061316296_"
obs_testfile = os.path.join(testdir, testfile_prefix + "obs.sav")
cal_testfile = os.path.join(testdir, testfile_prefix + "cal.sav")
settings_testfile = os.path.join(testdir, testfile_prefix + "settings.txt")
def test_read_fhdcal_raw_write_read_calfits(tmp_path):
"""
FHD cal to calfits loopback test.
Read in FHD cal files, write out as calfits, read back in and check for
object equality.
"""
fhd_cal = UVCal()
calfits_cal = UVCal()
fhd_cal.read_fhd_cal(cal_testfile, obs_testfile, settings_file=settings_testfile)
assert np.max(fhd_cal.gain_array) < 2.0
outfile = str(tmp_path / "outtest_FHDcal_1061311664.calfits")
fhd_cal.write_calfits(outfile, clobber=True)
calfits_cal.read_calfits(outfile)
assert fhd_cal == calfits_cal
return
def test_read_fhdcal_fit_write_read_calfits(tmp_path):
# do it again with fit gains (rather than raw)
fhd_cal = UVCal()
calfits_cal = UVCal()
fhd_cal.read_fhd_cal(
cal_testfile, obs_testfile, settings_file=settings_testfile, raw=False
)
outfile = str(tmp_path / "outtest_FHDcal_1061311664.calfits")
fhd_cal.write_calfits(outfile, clobber=True)
calfits_cal.read_calfits(outfile)
assert fhd_cal == calfits_cal
return
def test_extra_history(tmp_path):
"""Test that setting the extra_history keyword works."""
fhd_cal = UVCal()
calfits_cal = UVCal()
extra_history = "Some extra history for testing\n"
fhd_cal.read_fhd_cal(
cal_testfile,
obs_testfile,
settings_file=settings_testfile,
extra_history=extra_history,
)
outfile = str(tmp_path / "outtest_FHDcal_1061311664.calfits")
fhd_cal.write_calfits(outfile, clobber=True)
calfits_cal.read_calfits(outfile)
assert fhd_cal == calfits_cal
assert extra_history in fhd_cal.history
return
def test_extra_history_strings(tmp_path):
# try again with a list of history strings
fhd_cal = UVCal()
calfits_cal = UVCal()
extra_history = ["Some extra history for testing", "And some more history as well"]
fhd_cal.read_fhd_cal(
cal_testfile,
obs_testfile,
settings_file=settings_testfile,
extra_history=extra_history,
)
outfile = str(tmp_path / "outtest_FHDcal_1061311664.calfits")
fhd_cal.write_calfits(outfile, clobber=True)
calfits_cal.read_calfits(outfile)
assert fhd_cal == calfits_cal
for line in extra_history:
assert line in fhd_cal.history
return
def test_flags_galaxy(tmp_path):
"""Test files with time, freq and tile flags and galaxy models behave."""
testdir = os.path.join(DATA_PATH, "fhd_cal_data/flag_set")
obs_testfile_flag = os.path.join(testdir, testfile_prefix + "obs.sav")
cal_testfile_flag = os.path.join(testdir, testfile_prefix + "cal.sav")
settings_testfile_flag = os.path.join(testdir, testfile_prefix + "settings.txt")
fhd_cal = UVCal()
calfits_cal = UVCal()
fhd_cal.read_fhd_cal(
cal_testfile_flag, obs_testfile_flag, settings_file=settings_testfile_flag
)
outfile = str(tmp_path / "outtest_FHDcal_1061311664.calfits")
fhd_cal.write_calfits(outfile, clobber=True)
calfits_cal.read_calfits(outfile)
assert fhd_cal == calfits_cal
def test_break_read_fhdcal():
"""Try various cases of missing files."""
fhd_cal = UVCal()
pytest.raises(TypeError, fhd_cal.read_fhd_cal, cal_testfile) # Missing obs
with uvtest.check_warnings(UserWarning, "No settings file"):
fhd_cal.read_fhd_cal(cal_testfile, obs_testfile)
# Check only pyuvdata version history with no settings file
assert fhd_cal.history == "\n" + fhd_cal.pyuvdata_version_str
def test_read_multi(tmp_path):
"""Test reading in multiple files."""
testdir2 = os.path.join(DATA_PATH, "fhd_cal_data/set2")
obs_testfile_list = [
obs_testfile,
os.path.join(testdir2, testfile_prefix + "obs.sav"),
]
cal_testfile_list = [
cal_testfile,
os.path.join(testdir2, testfile_prefix + "cal.sav"),
]
settings_testfile_list = [
settings_testfile,
os.path.join(testdir2, testfile_prefix + "settings.txt"),
]
fhd_cal = UVCal()
calfits_cal = UVCal()
with uvtest.check_warnings(UserWarning, "UVParameter diffuse_model does not match"):
fhd_cal.read_fhd_cal(
cal_testfile_list, obs_testfile_list, settings_file=settings_testfile_list
)
outfile = str(tmp_path / "outtest_FHDcal_1061311664.calfits")
fhd_cal.write_calfits(outfile, clobber=True)
calfits_cal.read_calfits(outfile)
assert fhd_cal == calfits_cal
def test_break_read_multi():
"""Test errors for different numbers of files."""
testdir2 = os.path.join(DATA_PATH, "fhd_cal_data/set2")
obs_testfile_list = [
obs_testfile,
os.path.join(testdir2, testfile_prefix + "obs.sav"),
]
cal_testfile_list = [
cal_testfile,
os.path.join(testdir2, testfile_prefix + "cal.sav"),
]
settings_testfile_list = [
settings_testfile,
os.path.join(testdir2, testfile_prefix + "settings.txt"),
]
fhd_cal = UVCal()
pytest.raises(
ValueError,
fhd_cal.read_fhd_cal,
cal_testfile_list,
obs_testfile_list[0],
settings_file=settings_testfile_list,
)
pytest.raises(
ValueError,
fhd_cal.read_fhd_cal,
cal_testfile_list,
obs_testfile_list,
settings_file=settings_testfile_list[0],
)
pytest.raises(
ValueError,
fhd_cal.read_fhd_cal,
cal_testfile_list,
obs_testfile_list + obs_testfile_list,
settings_file=settings_testfile_list,
)
pytest.raises(
ValueError,
fhd_cal.read_fhd_cal,
cal_testfile_list,
obs_testfile_list,
settings_file=settings_testfile_list + settings_testfile_list,
)
pytest.raises(
ValueError,
fhd_cal.read_fhd_cal,
cal_testfile_list[0],
obs_testfile_list,
settings_file=settings_testfile_list[0],
)
pytest.raises(
ValueError,
fhd_cal.read_fhd_cal,
cal_testfile_list[0],
obs_testfile_list[0],
settings_file=settings_testfile_list,
)