Package: splatter
Type: Package
Title: Simple Simulation of Single-cell RNA Sequencing Data
Version: 1.29.0
Date: 2024-05-01
Authors@R:
    c(person("Luke", "Zappia", role = c("aut", "cre"),
      email = "luke@lazappi.id.au",
      comment = c(ORCID = "0000-0001-7744-8565", GitHub = "lazappi")),
      person("Belinda", "Phipson", role = c("aut"),
      email = "belinda.phipson@petermac.org",
      comment = c(ORCID = "0000-0002-1711-7454", GitHub = "bphipson")),
      person("Christina", "Azodi", role = c("ctb"),
      email = "cazodi@svi.edu.au",
      comment = c(ORCID = "0000-0002-6097-606X", GitHub = "azodichr")),
      person("Alicia", "Oshlack", role = c("aut"),
      email = "alicia.oshlack@petermac.org",
      comment = c(ORCID = "0000-0001-9788-5690")))
Description: Splatter is a package for the simulation of single-cell RNA
    sequencing count data. It provides a simple interface for creating complex
    simulations that are reproducible and well-documented. Parameters can be
    estimated from real data and functions are provided for comparing real and
    simulated datasets.
License: GPL-3 + file LICENSE
LazyData: FALSE
Depends:
    R (>= 4.0),
    SingleCellExperiment
Imports:
    BiocGenerics,
    BiocParallel,
    checkmate (>= 2.0.0),
    crayon,
    edgeR,
    fitdistrplus,
    grDevices,
    locfit,
    matrixStats,
    methods,
    rlang,
    S4Vectors,
    scuttle,
    stats,
    SummarizedExperiment,
    utils,
    withr
Suggests:
    BASiCS (>= 1.7.10),
    BiocManager,
    BiocSingular,
    BiocStyle,
    Biostrings,
    covr,
    cowplot,
    GenomeInfoDb,
    GenomicRanges,
    ggplot2 (>= 3.4.0),
    IRanges,
    igraph,
    knitr,
    limSolve,
    lme4,
    magick,
    mfa,
    phenopath,
    progress,
    preprocessCore,
    pscl,
    rmarkdown,
    scales,
    scater (>= 1.15.16),
    scDD,
    scran,
    SparseDC,
    spelling,
    testthat,
    VariantAnnotation,
    zinbwave,
biocViews: SingleCell, RNASeq, Transcriptomics, GeneExpression, Sequencing,
    Software, ImmunoOncology
URL: https://bioconductor.org/packages/splatter/, https://github.com/Oshlack/splatter
BugReports: https://github.com/Oshlack/splatter/issues
RoxygenNote: 7.3.1
Encoding: UTF-8
VignetteBuilder: knitr
Language: en-GB