ipyrad: Interactive assembly and analysis of RAD-seq data sets
=======================
Welcome to ipyrad, an interactive toolkit for assembly and analysis of restriction-site associated genomic data sets (e.g., RAD, ddRAD, GBS) for population genetic and phylogenetic studies.

Quick Install
------------
ipyrad is available through conda with all dependencies included. If you have conda installed you can simply:

    conda install -c ipyrad ipyrad

If you do not have conda you will enjoy our `complete installation instructions <http://ipyrad.readthedocs.io/installation.html>`_.

Documentation
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`Full documentation <http://ipyrad.readthedocs.io>`_ is available on our readthedocs site. There you will find installation instructions, example tutorials, and a full user guide.

Quick link to the `full tutorial <http://ipyrad.readthedocs.io/tutorial_intro_cli.html>`_.

Getting Help
------------
Join the ipyrad gitter channel and ask a question, request a feature, or flame the developers:

.. image:: https://badges.gitter.im/Join%20Chat.svg
   :alt: Join the chat at https://gitter.im/dereneaton/ipyrad
   :target: https://gitter.im/dereneaton/ipyrad?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge


License
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GPLv3

Contributors
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+ `Deren Eaton <deren.eaton@yale.edu>`_.  
+ `Isaac Overcast <isaac.overcast@gmail.com>`_.