.. toytree documentation master file, created by
   sphinx-quickstart on Tue Oct 16 20:42:08 2018.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

=================
Welcome to ipyrad
=================


Documentation
--------------

.. toctree::
   :maxdepth:1
   :titlesonly:

   1-ethos.rst
   2-try-it.rst
   3-installation.rst
   4-data.rst
   5-demultiplexing.rst
   6-params.rst
   7-outline.rst
   8-branching.rst
   9-tutorials.rst
   
   API-assembly/index.rst
   API-analysis/index.rst

   releasenotes.rst

Citation
--------
Eaton DAR & Overcast I. "ipyrad: Interactive assembly and analysis of RADseq datasets." Bioinformatics (2020).