lib/galaxy/auth
lib/galaxy/config.py
lib/galaxy/exceptions/error_codes.py
lib/galaxy/jobs/{__init__,error_level,manager,stock_rules}.py
lib/galaxy/main.py
lib/galaxy/managers/{api_keys,citations,collections,collections_util,datasets,folders,pages,tags,workflows}.py
lib/galaxy/model/orm/{engine_factory,now}.py
lib/galaxy/model/util.py
lib/galaxy/model/tool_shed_install/__init__.py
lib/galaxy/objectstore/{__init__,pulsar,rods,s3}.py
lib/galaxy/openid/__init__.py
lib/galaxy/queues.py
lib/galaxy/queue_worker.py
lib/galaxy/tags
lib/galaxy/tools/deps/{commands,containers,dependencies,dockerfiles,docker_util,__init__,requirements}.py
lib/galaxy/tools/filters
lib/galaxy/tools/parser
lib/galaxy/tools/toolbox
lib/galaxy/tools/{errors,loader_directory,test}.py
lib/galaxy/util/{__init__,json,permutations,plugin_config,properties,simplegraph,sockets,sleeper,streamball,submodules}.py
lib/galaxy/web/{proxy,security}
lib/galaxy/web/base/{__init__,interactive_environments}.py
lib/galaxy/web/formatting.py
lib/galaxy/webapps/__init__.py
lib/galaxy/webapps/galaxy/__init__.py
lib/galaxy/webapps/galaxy/api/{__init__,authenticate,dataset_collections,datatypes,folder_contents,folders,lda_datasets,job_files,libraries,library_contents,provenance,remote_files,search,users}.py
lib/galaxy/webapps/galaxy/controllers/{__init__,admin,cloudlaunch,workflow}.py
lib/galaxy/webapps/reports/app.py
lib/galaxy/webapps/reports/controllers/{__init__,jobs,query,workflows}.py
lib/galaxy/webapps/tool_shed/app.py
lib/galaxy/webapps/tool_shed/controllers/__init__.py
lib/galaxy/webapps/tool_shed/framework/__init__.py
lib/galaxy/webapps/tool_shed/framework/middleware/__init__.py
lib/galaxy/webapps/tool_shed/util/{__init__,shed_statistics}.py
lib/galaxy/work
lib/galaxy/version.py
lib/pulsar
lib/tool_shed/__init__.py
lib/tool_shed/galaxy_install/{install_manager,repair_repository_manager}.py
lib/tool_shed/galaxy_install/repository_dependencies
lib/tool_shed/galaxy_install/tools/{__init__,tool_panel_manager}.py
lib/tool_shed/repository_types/{__init__,registry,unrestricted}.py
lib/tool_shed/util/{__init__,repository_content_util,tool_util,web_util,workflow_util}.py