https://github.com/galaxyproject/galaxy
Tip revision: bbbd1b4c0d14293250fc62274f25f56b7d328040 authored by Daniel Blankenberg on 10 January 2013, 19:57:37 UTC
Fixes for Tool.check_and_update_param_values_helper() to check that the type of value provided is valid for the input parameter currently declared. Fixes an issue where rurun would select the wrong input dataset.
Fixes for Tool.check_and_update_param_values_helper() to check that the type of value provided is valid for the input parameter currently declared. Fixes an issue where rurun would select the wrong input dataset.
Tip revision: bbbd1b4
galaxy.fedora-init
#!/bin/bash
#
# Init file for Galaxy (http://galaxyproject.org/)
# Suitable for use on Fedora and derivatives (RedHat Enterprise Linux, Scientific Linux, CentOS)
#
# Contributed by Brad Chapman
#
# chkconfig: 2345 98 20
# description: Galaxy http://galaxyproject.org/
#--- config
SERVICE_NAME="galaxy"
RUN_AS="galaxy"
RUN_IN="/path/to/galaxy-dist"
#--- main actions
start() {
echo "Starting $SERVICE_NAME... "
cmd="cd $RUN_IN && sh run.sh --daemon"
case "$(id -un)" in
$RUN_AS)
eval "$cmd"
;;
root)
su - $RUN_AS -c "$cmd"
;;
*)
echo "*** ERROR *** must be $RUN_AS or root in order to control this service" >&2
exit 1
esac
echo "...done."
}
stop() {
echo -n "Stopping $SERVICE_NAME... "
cmd="cd $RUN_IN && sh run.sh --stop-daemon"
case "$(id -un)" in
$RUN_AS)
eval "$cmd"
;;
root)
su - $RUN_AS -c "$cmd"
;;
*)
echo "*** ERROR *** must be $RUN_AS or root in order to control this service" >&2
exit 1
esac
echo "done."
}
status() {
echo -n "$SERVICE_NAME status: "
while read pid; do
if [ "$(readlink -m /proc/$pid/cwd)" = "$(readlink -m $RUN_IN)" ]; then
echo "started"
return 0
fi
done < <(ps ax -o 'pid cmd' | grep -P '^\s*\d+ python ./scripts/paster.py serve' | awk '{print $1}')
echo "stopped"
return 3
}
notsupported() {
echo "*** ERROR*** $SERVICE_NAME: operation [$1] not supported"
}
usage() {
echo "Usage: $SERVICE_NAME start|stop|restart|status"
}
#---
case "$1" in
start)
start "$@"
;;
stop)
stop
;;
restart|reload)
stop
start
;;
status)
set +e
status
exit $?
;;
'')
usage >&2
exit 1
;;
*)
notsupported "$1" >&2
usage >&2
exit 1
;;
esac