https://github.com/galaxyproject/galaxy
Tip revision: 581977f112d86c9b01d951aa75ed98696ab064d8 authored by Daniel Blankenberg on 13 January 2015, 15:25:57 UTC
Fix a critical security vulnerability where unsanitized user-modifiable values could be included in a command line template.
Fix a critical security vulnerability where unsanitized user-modifiable values could be included in a command line template.
Tip revision: 581977f
run_functional_tests.sh
#!/bin/sh
# A good place to look for nose info: http://somethingaboutorange.com/mrl/projects/nose/
rm -f run_functional_tests.log
if [ ! $1 ]; then
python ./scripts/functional_tests.py -v --with-nosehtml --html-report-file run_functional_tests.html --exclude="^get" functional
elif [ $1 = 'help' ]; then
echo "'run_functional_tests.sh' for testing all the tools in functional directory"
echo "'run_functional_tests.sh aaa' for testing one test case of 'aaa' ('aaa' is the file name with path)"
echo "'run_functional_tests.sh -id bbb' for testing one tool with id 'bbb' ('bbb' is the tool id)"
echo "'run_functional_tests.sh -sid ccc' for testing one section with sid 'ccc' ('ccc' is the string after 'section::')"
echo "'run_functional_tests.sh -list' for listing all the tool ids"
elif [ $1 = '-id' ]; then
python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$2 --with-nosehtml --html-report-file run_functional_tests.html
elif [ $1 = '-sid' ]; then
python ./scripts/functional_tests.py --with-nosehtml --html-report-file run_functional_tests.html -v `python tool_list.py $2`
elif [ $1 = '-list' ]; then
python tool_list.py
echo "==========================================================================================================================================="
echo "'run_functional_tests.sh -id bbb' for testing one tool with id 'bbb' ('bbb' is the tool id)"
echo "'run_functional_tests.sh -sid ccc' for testing one section with sid 'ccc' ('ccc' is the string after 'section::')"
elif [ $1 = '-migrated' ]; then
if [ ! $2 ]; then
python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -migrated
elif [ $2 = '-id' ]; then
# TODO: This option is not tested...
python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$3 --with-nosehtml --html-report-file run_functional_tests.html -migrated
else
python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -migrated
fi
elif [ $1 = '-installed' ]; then
if [ ! $2 ]; then
python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -installed
elif [ $2 = '-id' ]; then
# TODO: This option is not tested...
python ./scripts/functional_tests.py -v functional.test_toolbox:TestForTool_$3 --with-nosehtml --html-report-file run_functional_tests.html -installed
else
python ./scripts/functional_tests.py -v functional.test_toolbox --with-nosehtml --html-report-file run_functional_tests.html -installed
fi
else
python ./scripts/functional_tests.py -v --with-nosehtml --html-report-file run_functional_tests.html $1
fi
echo "'run_functional_tests.sh help' for help"
echo "Note: galaxy test framework uses tool_conf.xml.sample, not tool_conf.xml"