https://github.com/hms-dbmi/higlass
- HEAD
- refs/heads/alexander-veit/add-axis-label-option
- refs/heads/alexander-veit/close-viewconf-issue
- refs/heads/alexander-veit/http-server-mocking
- refs/heads/alexander-veit/mocking-of-http-requests
- refs/heads/alexpreynolds-server-doc-patch
- refs/heads/aveit-enable-click
- refs/heads/bedlike-intervals
- refs/heads/chromsizes-option
- refs/heads/chromsizes2
- refs/heads/click-event
- refs/heads/dependabot/npm_and_yarn/d3-color-3.1.0
- refs/heads/develop
- refs/heads/drag-highlighting
- refs/heads/etowahadams/type-utils
- refs/heads/export-data
- refs/heads/fetcher-worker
- refs/heads/flekschas/bombastify-color-buffer
- refs/heads/flekschas/dark-theme
- refs/heads/flekschas/fix-mouse-move-zoom-api
- refs/heads/flekschas/improve-2d-annotations
- refs/heads/flekschas/remove-react-bootstrap
- refs/heads/flekschas/support-old-mapbox-tiles
- refs/heads/flekschas/updates-for-peax
- refs/heads/forwarded-events
- refs/heads/genome-position-search-box-select
- refs/heads/heatmap-by-bounds
- refs/heads/heatmap-by-bounds2
- refs/heads/issue-814-patch
- refs/heads/keller-mark/aggregation-post-api-and-file-url-bigwig-with-rowinfo
- refs/heads/keller-mark/emit-on-track-resize
- refs/heads/keller-mark/overlay-editable-track
- refs/heads/keller-mark/plugintrack-state-bug
- refs/heads/keller-mark/publish-ids-with-wheel-events
- refs/heads/keller-mark/select-rows-agg
- refs/heads/keller-mark/serverless-zarr-multivec
- refs/heads/manzt/abstract-fetcher
- refs/heads/manzt/relocate-test-utils
- refs/heads/manzt/safe-assign-tile-response-data
- refs/heads/manzt/stacked-data-fetcher
- refs/heads/mccalluc/screenshots-of-examples
- refs/heads/merge-overlay-tracks
- refs/heads/nan-as-zero
- refs/heads/negative-bounds-zooming
- refs/heads/non-triangular
- refs/heads/overlay-tracks
- refs/heads/peax
- refs/heads/pkerpedjiev/2d-tiles-no-maxwidth
- refs/heads/pkerpedjiev/all-linked-selection
- refs/heads/pkerpedjiev/bam-fetcher
- refs/heads/pkerpedjiev/docs-updates
- refs/heads/pkerpedjiev/docs-updates-1
- refs/heads/pkerpedjiev/docs-updates-1-1
- refs/heads/pkerpedjiev/fetcher-worker
- refs/heads/pkerpedjiev/fileurl-docs
- refs/heads/pkerpedjiev/gene-on-click
- refs/heads/pkerpedjiev/hide-track-chooser-fix
- refs/heads/pkerpedjiev/limited-select-brush
- refs/heads/pkerpedjiev/loading-text
- refs/heads/pkerpedjiev/nan-value-scale
- refs/heads/pkerpedjiev/on-zoom-to-data
- refs/heads/pkerpedjiev/promise-api
- refs/heads/pkerpedjiev/react17
- refs/heads/pkerpedjiev/react18
- refs/heads/pkerpedjiev/register-url-1
- refs/heads/pkerpedjiev/remote-annotations
- refs/heads/pkerpedjiev/remove-1d-heatmap
- refs/heads/pkerpedjiev/remove-component-will-mount
- refs/heads/pkerpedjiev/render-promoters
- refs/heads/pkerpedjiev/replace-tileposanddimensions-with-trackutils
- refs/heads/pkerpedjiev/run-prettier
- refs/heads/pkerpedjiev/simple-svg-track
- refs/heads/pkerpedjiev/test-fix-attempt
- refs/heads/pkerpedjiev/test-x
- refs/heads/pkerpedjiev/update-docs
- refs/heads/pkerpedjiev/value-scale-and-track-utils
- refs/heads/pkerpedjiev/visible_tiles_bins_per_dim
- refs/heads/pkerpedjiev/warn-about-unknown-orientation
- refs/heads/pkerpedjiev/webpack5
- refs/heads/pkerpedjiev/workers-attempt
- refs/heads/pkerpedjiev/xvfb-fixes
- refs/heads/pre-new-track
- refs/heads/propagate-on-click
- refs/heads/remove-react-bootstrap-from-index-html
- refs/heads/scss-updates
- refs/heads/sehilyi/default-zoomlimit
- refs/heads/sehilyi/gene-search-api
- refs/heads/sehilyi/gene-suggestion-api
- refs/heads/sehilyi/layout-vertical-compact
- refs/heads/sehilyi/non-center-track
- refs/heads/sehilyi/plugin-brush-test
- refs/heads/sehilyi/pnpm
- refs/heads/sehilyi/properly-initialize-brush-style
- refs/heads/sehilyi/react-18
- refs/heads/sehilyi/react-dependency
- refs/heads/sehilyi/readable-vertical-labels
- refs/heads/sehilyi/refactor-2
- refs/heads/sehilyi/refactor-core
- refs/heads/sehilyi/rgl-allow-overlap
- refs/heads/sehilyi/tileset-failed-text
- refs/heads/selection-tracks
- refs/heads/test-track-source-servers
- refs/heads/threading
- refs/heads/update-docs
- refs/heads/v1.7
- refs/heads/v1.7.0
- refs/heads/vertical-sections
- refs/tags/adjustable-domain
- refs/tags/canvas-zooming
- refs/tags/comparison-view
- refs/tags/debug-mode
- refs/tags/demo-ismb
- refs/tags/elasticsearch
- refs/tags/hi-pixi
- refs/tags/merge-with-goomba
- refs/tags/mirror2-tiles
- refs/tags/multiple-datasets
- refs/tags/no-flickering-text
- refs/tags/page-prototype
- refs/tags/shitty-css
- refs/tags/simple-frontpage
- refs/tags/simpler-tracks
- refs/tags/threaded-tile-loading
- refs/tags/v0.1
- refs/tags/v0.10.18
- refs/tags/v0.10.4
- refs/tags/v0.10.7
- refs/tags/v0.5.2
- refs/tags/v0.5.3
- refs/tags/v1.0.0
- refs/tags/v1.0.0-alpha.10
- refs/tags/v1.0.0-alpha.11
- refs/tags/v1.0.0-alpha.12
- refs/tags/v1.0.0-alpha.3
- refs/tags/v1.0.0-alpha.4
- refs/tags/v1.0.0-alpha.5
- refs/tags/v1.0.0-alpha.6
- refs/tags/v1.0.0-alpha.7
- refs/tags/v1.0.0-alpha.8
- refs/tags/v1.0.0-alpha.9
- refs/tags/v1.0.3
- refs/tags/v1.11.3
- refs/tags/v1.11.8
- refs/tags/v1.3.0
- refs/tags/v1.3.0-rc.4
- refs/tags/v1.3.0-rc.5
- refs/tags/v1.3.0-rc2
- refs/tags/v1.8.0
- refs/tags/v1.8.2
- refs/tags/v1.8.3
- refs/tags/v1.8.5
- refs/tags/v1.9.1-rg1
- refs/tags/v1.9.1.rg1
- refs/tags/v1.9.3
- v1.9.5
- v1.9.4
- v1.9.2
- v1.9.1
- v1.9.0
- v1.8.4
- v1.8.1
- v1.7.2
- v1.7.1
- v1.7.0
- v1.6.9
- v1.6.8
- v1.6.7
- v1.6.6
- v1.6.5
- v1.6.4
- v1.6.3
- v1.6.2
- v1.6.12
- v1.6.11
- v1.6.10
- v1.6.1
- v1.6.0
- v1.5.8
- v1.5.7
- v1.5.6
- v1.5.5
- v1.5.4
- v1.5.3
- v1.5.2
- v1.5.1
- v1.5.0
- v1.4.2
- v1.4.1
- v1.4.0
- v1.3.1
- v1.3.0-rc1
- v1.3.0-rc.3
- v1.3.0-rc.2
- v1.2.8
- v1.2.7
- v1.2.6
- v1.2.5
- v1.2.4
- v1.2.3
- v1.2.2
- v1.2.1
- v1.2.0
- v1.13.4
- v1.13.3
- v1.13.2
- v1.13.1
- v1.13.0
- v1.12.4
- v1.12.3
- v1.12.2
- v1.12.1
- v1.12.0
- v1.11.9
- v1.11.7
- v1.11.6
- v1.11.5
- v1.11.4
- v1.11.2
- v1.11.11
- v1.11.10
- v1.11.1
- v1.11.0
- v1.10.2
- v1.10.1
- v1.10.0
- v1.1.5
- v1.1.4
- v1.1.3
- v1.1.2
- v1.1.1
- v1.1.0
- v1.0.4
- v1.0.2
- v1.0.1
- v1.0.0-alpha.2
- v1.0.0-alpha.1
- v0.9.9
- v0.9.8
- v0.9.7
- v0.9.6
- v0.9.4
- v0.9.3
- v0.9.2
- v0.9.15
- v0.9.14
- v0.9.13
- v0.9.12
- v0.9.11
- v0.9.10
- v0.9.1
- v0.9.0
- v0.8.9
- v0.8.8
- v0.8.7
- v0.8.6
- v0.8.5
- v0.8.45
- v0.8.44
- v0.8.43
- v0.8.42
- v0.8.41
- v0.8.40
- v0.8.4
- v0.8.39
- v0.8.38
- v0.8.37
- v0.8.36
- v0.8.35
- v0.8.34
- v0.8.33
- v0.8.32
- v0.8.31
- v0.8.30
- v0.8.3
- v0.8.29
- v0.8.28
- v0.8.27
- v0.8.26
- v0.8.25
- v0.8.24
- v0.8.23
- v0.8.22
- v0.8.21
- v0.8.20
- v0.8.2
- v0.8.19
- v0.8.18
- v0.8.17
- v0.8.16
- v0.8.15
- v0.8.14
- v0.8.13
- v0.8.12
- v0.8.11
- v0.8.10
- v0.8.1
- v0.8.0
- v0.7.3
- v0.7.2
- v0.7.1
- v0.7.0
- v0.6.8
- v0.6.7
- v0.6.6
- v0.6.5
- v0.6.4
- v0.6.3
- v0.6.2
- v0.6.1
- v0.6.0
- v0.5.9
- v0.5.8
- v0.5.7
- v0.5.6
- v0.5.5
- v0.5.4
- v0.5.16
- v0.5.15
- v0.5.14
- v0.5.13
- v0.5.12
- v0.5.11
- v0.5.10
- v0.5.1
- v0.5.0
- v0.4.9
- v0.4.8
- v0.4.7
- v0.4.6
- v0.4.5
- v0.4.4
- v0.4.39
- v0.4.38
- v0.4.37
- v0.4.36
- v0.4.35
- v0.4.34
- v0.4.33
- v0.4.32
- v0.4.31
- v0.4.30
- v0.4.3
- v0.4.29
- v0.4.28
- v0.4.27
- v0.4.26
- v0.4.25
- v0.4.24
- v0.4.23
- v0.4.22
- v0.4.21
- v0.4.20
- v0.4.2
- v0.4.19
- v0.4.18
- v0.4.17
- v0.4.16
- v0.4.15
- v0.4.14
- v0.4.13
- v0.4.12
- v0.4.11
- v0.4.10
- v0.4.1
- v0.4.0
- v0.3.0
- v0.2.4
- v0.2.3
- v0.2.2
- v0.2.1
- v0.2.0
- v0.10.9
- v0.10.6
- v0.10.5
- v0.10.3
- v0.10.22
- v0.10.21
- v0.10.20
- v0.10.2
- v0.10.19
- v0.10.17
- v0.10.16
- v0.10.15
- v0.10.14
- v0.10.13
- v0.10.12
- v0.10.11
- v0.10.10
- v0.10.1-0
- v0.10.1
- v0.10.0-0
- v0.10.0
- v0.1.1
Raw File
Take a new snapshot of a software origin
If the archived software origin currently browsed is not synchronized with its upstream version (for instance when new commits have been issued), you can explicitly request Software Heritage to take a new snapshot of it.
Use the form below to proceed. Once a request has been submitted and accepted, it will be processed as soon as possible. You can then check its processing state by visiting this dedicated page.![swh spinner](/static/img/swh-spinner.gif)
Processing "take a new snapshot" request ...
Permalinks
To reference or cite the objects present in the Software Heritage archive, permalinks based on SoftWare Hash IDentifiers (SWHIDs) must be used.
Select below a type of object currently browsed in order to display its associated SWHID and permalink.
Tip revision: 577246c3488869c60de6bb61970aa8a4d9a2a665 authored by Peter Kerpedjiev on 10 November 2016, 19:05:39 UTC
0.2.3
0.2.3
Tip revision: 577246c
README
#python scripts/make_tiles.py scripts/test/data/hic_small.tsv -o jsons/tiles -p pos1,pos2 --min-value count --max-value count --importance count
python scripts/make_tiles.py -o jsons/tiles -p pos1,pos2 --min-value count --max-value count --importance count -c pos1,pos2,count --max-zoom 5 data/chr22_100kb.RAWobserved
# Move a newly built page to the gh-pages branch
gulp build; git commit -am "New build"; rm -rf /tmp/dist/; cp -r dist /tmp; git checkout gh-pages; cp -r /tmp/dist/* .; cp demo.html index.html;
## Starting the spark notebook
ipython notebook --profile=pyspark --no-browser
## refGene.txt.gz can be downloaded here:
# This implies that its coordinates are relative to the hg19 assembly
http://hgdownload.cse.ucsc.edu/goldenpath/hg19/database/refGene.txt.gz
eval $(ssh-agent)
ssh-add ~/devenv-key.pem
rsync -avz ubuntu@52.32.97.221:/data/refgene-tiles-small/ jsons/tiles
### Sample reads set
samtools view -h data/GM12878_SRR1658581_10pc_3_R1_hg19.bwt2glob.bam | head -n 65536 | samtools view -Sb > data/65536.bam
### Sample tracks from Encode project
GM12878 cell line RNAseq
https://www.encodeproject.org/experiments/ENCSR000CVT/