https://github.com/morrislab/phylowgs
Tip revision: 2205be16e9ad68426e837229b593f47e36b3547e authored by Jeff Wintersinger on 29 September 2019, 15:37:35 UTC
Make discarding superclones optional.
Make discarding superclones optional.
Tip revision: 2205be1
emptysim.5.20.100.ssm.txt
id gene a d mu_r mu_v
s0 S0 11 19 0.999 0.5
s1 S1 26 35 0.999 0.5
s2 S2 11 18 0.999 0.5
s3 S3 11 16 0.999 0.5
s4 S4 13 16 0.999 0.5
s5 S5 15 18 0.999 0.5
s6 S6 15 18 0.999 0.5
s7 S7 9 16 0.999 0.5
s8 S8 7 15 0.999 0.5
s9 S9 12 18 0.999 0.5
s10 S10 20 22 0.999 0.5
s11 S11 17 21 0.999 0.5
s12 S12 9 15 0.999 0.5
s13 S13 11 20 0.999 0.5
s14 S14 10 14 0.999 0.5
s15 S15 11 16 0.999 0.5
s16 S16 10 19 0.999 0.5
s17 S17 10 17 0.999 0.5
s18 S18 14 20 0.999 0.5
s19 S19 11 17 0.999 0.5
s20 S20 14 21 0.999 0.5
s21 S21 17 20 0.999 0.5
s22 S22 14 18 0.999 0.5
s23 S23 14 20 0.999 0.5
s24 S24 19 23 0.999 0.5
s25 S25 10 15 0.999 0.5
s26 S26 13 20 0.999 0.5
s27 S27 13 14 0.999 0.5
s28 S28 12 19 0.999 0.5
s29 S29 9 17 0.999 0.5
s30 S30 18 28 0.999 0.5
s31 S31 20 27 0.999 0.5
s32 S32 12 25 0.999 0.5
s33 S33 17 24 0.999 0.5
s34 S34 12 17 0.999 0.5
s35 S35 12 19 0.999 0.5
s36 S36 9 17 0.999 0.5
s37 S37 19 21 0.999 0.5
s38 S38 16 23 0.999 0.5
s39 S39 11 16 0.999 0.5
s40 S40 11 15 0.999 0.5
s41 S41 9 13 0.999 0.5
s42 S42 20 29 0.999 0.5
s43 S43 11 19 0.999 0.5
s44 S44 24 31 0.999 0.5
s45 S45 17 20 0.999 0.5
s46 S46 14 19 0.999 0.5
s47 S47 15 17 0.999 0.5
s48 S48 8 11 0.999 0.5
s49 S49 12 14 0.999 0.5
s50 S50 12 17 0.999 0.5
s51 S51 18 23 0.999 0.5
s52 S52 18 20 0.999 0.5
s53 S53 13 22 0.999 0.5
s54 S54 10 19 0.999 0.5
s55 S55 14 20 0.999 0.5
s56 S56 9 18 0.999 0.5
s57 S57 8 15 0.999 0.5
s58 S58 11 18 0.999 0.5
s59 S59 13 17 0.999 0.5
s60 S60 14 19 0.999 0.5
s61 S61 11 18 0.999 0.5
s62 S62 18 23 0.999 0.5
s63 S63 21 26 0.999 0.5
s64 S64 14 16 0.999 0.5
s65 S65 19 27 0.999 0.5
s66 S66 11 17 0.999 0.5
s67 S67 13 19 0.999 0.5
s68 S68 21 31 0.999 0.5
s69 S69 18 31 0.999 0.5
s70 S70 13 23 0.999 0.5
s71 S71 16 21 0.999 0.5
s72 S72 10 16 0.999 0.5
s73 S73 13 19 0.999 0.5
s74 S74 12 20 0.999 0.5
s75 S75 18 23 0.999 0.5
s76 S76 13 19 0.999 0.5
s77 S77 16 23 0.999 0.5
s78 S78 17 21 0.999 0.5
s79 S79 15 20 0.999 0.5
s80 S80 10 11 0.999 0.5
s81 S81 14 26 0.999 0.5
s82 S82 17 23 0.999 0.5
s83 S83 12 17 0.999 0.5
s84 S84 11 25 0.999 0.5
s85 S85 10 15 0.999 0.5
s86 S86 14 20 0.999 0.5
s87 S87 7 11 0.999 0.5
s88 S88 17 24 0.999 0.5
s89 S89 16 21 0.999 0.5
s90 S90 18 25 0.999 0.5
s91 S91 16 21 0.999 0.5
s92 S92 11 19 0.999 0.5
s93 S93 15 22 0.999 0.5
s94 S94 11 19 0.999 0.5
s95 S95 16 23 0.999 0.5
s96 S96 12 19 0.999 0.5
s97 S97 15 22 0.999 0.5
s98 S98 19 25 0.999 0.5
s99 S99 13 24 0.999 0.5
s100 S100 19 24 0.999 0.5
s101 S101 25 27 0.999 0.5
s102 S102 15 17 0.999 0.5
s103 S103 16 18 0.999 0.5
s104 S104 18 21 0.999 0.5
s105 S105 13 14 0.999 0.5
s106 S106 9 13 0.999 0.5
s107 S107 14 17 0.999 0.5
s108 S108 18 21 0.999 0.5
s109 S109 14 18 0.999 0.5
s110 S110 17 20 0.999 0.5
s111 S111 18 25 0.999 0.5
s112 S112 18 22 0.999 0.5
s113 S113 13 18 0.999 0.5
s114 S114 15 20 0.999 0.5
s115 S115 21 23 0.999 0.5
s116 S116 28 33 0.999 0.5
s117 S117 12 17 0.999 0.5
s118 S118 19 20 0.999 0.5
s119 S119 18 25 0.999 0.5
s120 S120 13 15 0.999 0.5
s121 S121 16 19 0.999 0.5
s122 S122 19 21 0.999 0.5
s123 S123 14 16 0.999 0.5
s124 S124 17 21 0.999 0.5
s125 S125 11 11 0.999 0.5
s126 S126 14 18 0.999 0.5
s127 S127 14 18 0.999 0.5
s128 S128 11 16 0.999 0.5
s129 S129 20 23 0.999 0.5
s130 S130 13 18 0.999 0.5
s131 S131 19 21 0.999 0.5
s132 S132 18 21 0.999 0.5
s133 S133 24 30 0.999 0.5
s134 S134 16 18 0.999 0.5
s135 S135 20 26 0.999 0.5
s136 S136 16 22 0.999 0.5
s137 S137 15 16 0.999 0.5
s138 S138 14 21 0.999 0.5
s139 S139 22 26 0.999 0.5
s140 S140 12 16 0.999 0.5
s141 S141 19 19 0.999 0.5
s142 S142 15 19 0.999 0.5
s143 S143 22 28 0.999 0.5
s144 S144 16 19 0.999 0.5
s145 S145 11 15 0.999 0.5
s146 S146 11 14 0.999 0.5
s147 S147 12 18 0.999 0.5
s148 S148 16 19 0.999 0.5
s149 S149 13 19 0.999 0.5
s150 S150 14 19 0.999 0.5
s151 S151 14 19 0.999 0.5
s152 S152 17 21 0.999 0.5
s153 S153 20 28 0.999 0.5
s154 S154 12 14 0.999 0.5
s155 S155 20 28 0.999 0.5
s156 S156 23 25 0.999 0.5
s157 S157 23 26 0.999 0.5
s158 S158 25 28 0.999 0.5
s159 S159 14 15 0.999 0.5
s160 S160 17 21 0.999 0.5
s161 S161 14 16 0.999 0.5
s162 S162 13 18 0.999 0.5
s163 S163 23 28 0.999 0.5
s164 S164 8 11 0.999 0.5
s165 S165 16 19 0.999 0.5
s166 S166 11 17 0.999 0.5
s167 S167 18 21 0.999 0.5
s168 S168 13 18 0.999 0.5
s169 S169 15 20 0.999 0.5
s170 S170 21 25 0.999 0.5
s171 S171 16 23 0.999 0.5
s172 S172 16 19 0.999 0.5
s173 S173 15 22 0.999 0.5
s174 S174 26 31 0.999 0.5
s175 S175 12 15 0.999 0.5
s176 S176 24 28 0.999 0.5
s177 S177 18 21 0.999 0.5
s178 S178 13 15 0.999 0.5
s179 S179 17 25 0.999 0.5
s180 S180 10 16 0.999 0.5
s181 S181 18 22 0.999 0.5
s182 S182 19 21 0.999 0.5
s183 S183 11 13 0.999 0.5
s184 S184 22 25 0.999 0.5
s185 S185 9 11 0.999 0.5
s186 S186 20 23 0.999 0.5
s187 S187 15 20 0.999 0.5
s188 S188 15 19 0.999 0.5
s189 S189 18 19 0.999 0.5
s190 S190 17 19 0.999 0.5
s191 S191 16 20 0.999 0.5
s192 S192 22 23 0.999 0.5
s193 S193 13 19 0.999 0.5
s194 S194 16 18 0.999 0.5
s195 S195 22 25 0.999 0.5
s196 S196 12 16 0.999 0.5
s197 S197 14 22 0.999 0.5
s198 S198 20 23 0.999 0.5
s199 S199 14 16 0.999 0.5
s200 S200 29 31 0.999 0.5
s201 S201 18 19 0.999 0.5
s202 S202 17 19 0.999 0.5
s203 S203 22 22 0.999 0.5
s204 S204 11 11 0.999 0.5
s205 S205 14 17 0.999 0.5
s206 S206 24 28 0.999 0.5
s207 S207 22 24 0.999 0.5
s208 S208 10 13 0.999 0.5
s209 S209 18 18 0.999 0.5
s210 S210 17 19 0.999 0.5
s211 S211 19 24 0.999 0.5
s212 S212 12 12 0.999 0.5
s213 S213 23 23 0.999 0.5
s214 S214 16 19 0.999 0.5
s215 S215 22 25 0.999 0.5
s216 S216 17 18 0.999 0.5
s217 S217 19 21 0.999 0.5
s218 S218 14 16 0.999 0.5
s219 S219 16 18 0.999 0.5
s220 S220 19 20 0.999 0.5
s221 S221 17 21 0.999 0.5
s222 S222 19 20 0.999 0.5
s223 S223 11 13 0.999 0.5
s224 S224 13 15 0.999 0.5
s225 S225 14 16 0.999 0.5
s226 S226 26 29 0.999 0.5
s227 S227 22 25 0.999 0.5
s228 S228 18 20 0.999 0.5
s229 S229 17 18 0.999 0.5
s230 S230 21 24 0.999 0.5
s231 S231 15 16 0.999 0.5
s232 S232 16 17 0.999 0.5
s233 S233 21 25 0.999 0.5
s234 S234 17 19 0.999 0.5
s235 S235 15 17 0.999 0.5
s236 S236 17 19 0.999 0.5
s237 S237 14 14 0.999 0.5
s238 S238 11 12 0.999 0.5
s239 S239 15 15 0.999 0.5
s240 S240 16 18 0.999 0.5
s241 S241 21 22 0.999 0.5
s242 S242 23 23 0.999 0.5
s243 S243 24 29 0.999 0.5
s244 S244 21 22 0.999 0.5
s245 S245 21 22 0.999 0.5
s246 S246 26 27 0.999 0.5
s247 S247 14 15 0.999 0.5
s248 S248 14 19 0.999 0.5
s249 S249 15 18 0.999 0.5
s250 S250 14 14 0.999 0.5
s251 S251 14 15 0.999 0.5
s252 S252 27 28 0.999 0.5
s253 S253 17 23 0.999 0.5
s254 S254 16 16 0.999 0.5
s255 S255 14 15 0.999 0.5
s256 S256 24 24 0.999 0.5
s257 S257 13 17 0.999 0.5
s258 S258 21 23 0.999 0.5
s259 S259 25 26 0.999 0.5
s260 S260 18 19 0.999 0.5
s261 S261 20 20 0.999 0.5
s262 S262 25 27 0.999 0.5
s263 S263 20 21 0.999 0.5
s264 S264 12 13 0.999 0.5
s265 S265 23 24 0.999 0.5
s266 S266 17 18 0.999 0.5
s267 S267 13 17 0.999 0.5
s268 S268 21 26 0.999 0.5
s269 S269 22 24 0.999 0.5
s270 S270 19 19 0.999 0.5
s271 S271 21 21 0.999 0.5
s272 S272 16 16 0.999 0.5
s273 S273 17 21 0.999 0.5
s274 S274 19 24 0.999 0.5
s275 S275 20 23 0.999 0.5
s276 S276 19 21 0.999 0.5
s277 S277 19 19 0.999 0.5
s278 S278 22 22 0.999 0.5
s279 S279 20 21 0.999 0.5
s280 S280 24 28 0.999 0.5
s281 S281 18 19 0.999 0.5
s282 S282 19 21 0.999 0.5
s283 S283 16 17 0.999 0.5
s284 S284 15 20 0.999 0.5
s285 S285 19 22 0.999 0.5
s286 S286 16 18 0.999 0.5
s287 S287 24 29 0.999 0.5
s288 S288 20 21 0.999 0.5
s289 S289 15 17 0.999 0.5
s290 S290 20 22 0.999 0.5
s291 S291 20 21 0.999 0.5
s292 S292 21 22 0.999 0.5
s293 S293 21 24 0.999 0.5
s294 S294 11 12 0.999 0.5
s295 S295 14 16 0.999 0.5
s296 S296 22 28 0.999 0.5
s297 S297 18 22 0.999 0.5
s298 S298 21 24 0.999 0.5
s299 S299 14 21 0.999 0.5
s300 S300 16 17 0.999 0.5
s301 S301 20 21 0.999 0.5
s302 S302 21 21 0.999 0.5
s303 S303 24 24 0.999 0.5
s304 S304 19 19 0.999 0.5
s305 S305 12 13 0.999 0.5
s306 S306 23 23 0.999 0.5
s307 S307 29 29 0.999 0.5
s308 S308 17 17 0.999 0.5
s309 S309 20 20 0.999 0.5
s310 S310 14 14 0.999 0.5
s311 S311 25 26 0.999 0.5
s312 S312 17 18 0.999 0.5
s313 S313 19 20 0.999 0.5
s314 S314 23 23 0.999 0.5
s315 S315 16 16 0.999 0.5
s316 S316 17 17 0.999 0.5
s317 S317 26 27 0.999 0.5
s318 S318 19 19 0.999 0.5
s319 S319 23 23 0.999 0.5
s320 S320 19 21 0.999 0.5
s321 S321 20 20 0.999 0.5
s322 S322 17 17 0.999 0.5
s323 S323 23 23 0.999 0.5
s324 S324 12 12 0.999 0.5
s325 S325 18 19 0.999 0.5
s326 S326 19 19 0.999 0.5
s327 S327 15 16 0.999 0.5
s328 S328 17 21 0.999 0.5
s329 S329 14 15 0.999 0.5
s330 S330 22 22 0.999 0.5
s331 S331 22 22 0.999 0.5
s332 S332 15 15 0.999 0.5
s333 S333 15 17 0.999 0.5
s334 S334 17 17 0.999 0.5
s335 S335 28 28 0.999 0.5
s336 S336 23 24 0.999 0.5
s337 S337 18 18 0.999 0.5
s338 S338 18 18 0.999 0.5
s339 S339 18 19 0.999 0.5
s340 S340 25 26 0.999 0.5
s341 S341 17 19 0.999 0.5
s342 S342 17 17 0.999 0.5
s343 S343 18 18 0.999 0.5
s344 S344 24 26 0.999 0.5
s345 S345 17 19 0.999 0.5
s346 S346 17 19 0.999 0.5
s347 S347 24 24 0.999 0.5
s348 S348 24 24 0.999 0.5
s349 S349 24 25 0.999 0.5
s350 S350 26 26 0.999 0.5
s351 S351 20 20 0.999 0.5
s352 S352 24 24 0.999 0.5
s353 S353 21 21 0.999 0.5
s354 S354 21 21 0.999 0.5
s355 S355 15 16 0.999 0.5
s356 S356 12 12 0.999 0.5
s357 S357 14 14 0.999 0.5
s358 S358 13 13 0.999 0.5
s359 S359 17 17 0.999 0.5
s360 S360 18 18 0.999 0.5
s361 S361 16 17 0.999 0.5
s362 S362 22 23 0.999 0.5
s363 S363 12 12 0.999 0.5
s364 S364 20 21 0.999 0.5
s365 S365 19 19 0.999 0.5
s366 S366 19 20 0.999 0.5
s367 S367 20 20 0.999 0.5
s368 S368 18 18 0.999 0.5
s369 S369 16 16 0.999 0.5
s370 S370 18 18 0.999 0.5
s371 S371 21 21 0.999 0.5
s372 S372 25 25 0.999 0.5
s373 S373 22 22 0.999 0.5
s374 S374 25 25 0.999 0.5
s375 S375 18 19 0.999 0.5
s376 S376 22 23 0.999 0.5
s377 S377 21 22 0.999 0.5
s378 S378 25 26 0.999 0.5
s379 S379 16 17 0.999 0.5
s380 S380 22 22 0.999 0.5
s381 S381 20 20 0.999 0.5
s382 S382 20 21 0.999 0.5
s383 S383 19 19 0.999 0.5
s384 S384 16 16 0.999 0.5
s385 S385 14 15 0.999 0.5
s386 S386 21 21 0.999 0.5
s387 S387 14 15 0.999 0.5
s388 S388 11 12 0.999 0.5
s389 S389 20 20 0.999 0.5
s390 S390 17 17 0.999 0.5
s391 S391 15 15 0.999 0.5
s392 S392 12 12 0.999 0.5
s393 S393 15 17 0.999 0.5
s394 S394 20 21 0.999 0.5
s395 S395 24 24 0.999 0.5
s396 S396 18 18 0.999 0.5
s397 S397 23 23 0.999 0.5
s398 S398 23 25 0.999 0.5
s399 S399 20 20 0.999 0.5
