https://github.com/morrislab/phylowgs
Tip revision: 2205be16e9ad68426e837229b593f47e36b3547e authored by Jeff Wintersinger on 29 September 2019, 15:37:35 UTC
Make discarding superclones optional.
Make discarding superclones optional.
Tip revision: 2205be1
emptysim.6.50.100.ssm.txt
id gene a d mu_r mu_v
s0 S0 33 54 0.999 0.5
s1 S1 32 54 0.999 0.5
s2 S2 34 47 0.999 0.5
s3 S3 26 47 0.999 0.5
s4 S4 29 50 0.999 0.5
s5 S5 38 68 0.999 0.5
s6 S6 31 52 0.999 0.5
s7 S7 31 50 0.999 0.5
s8 S8 30 54 0.999 0.5
s9 S9 29 49 0.999 0.5
s10 S10 32 46 0.999 0.5
s11 S11 29 52 0.999 0.5
s12 S12 30 50 0.999 0.5
s13 S13 37 54 0.999 0.5
s14 S14 36 50 0.999 0.5
s15 S15 37 50 0.999 0.5
s16 S16 36 56 0.999 0.5
s17 S17 33 49 0.999 0.5
s18 S18 29 42 0.999 0.5
s19 S19 24 43 0.999 0.5
s20 S20 38 49 0.999 0.5
s21 S21 36 68 0.999 0.5
s22 S22 44 58 0.999 0.5
s23 S23 27 34 0.999 0.5
s24 S24 39 55 0.999 0.5
s25 S25 28 39 0.999 0.5
s26 S26 34 58 0.999 0.5
s27 S27 22 37 0.999 0.5
s28 S28 34 50 0.999 0.5
s29 S29 31 44 0.999 0.5
s30 S30 28 45 0.999 0.5
s31 S31 27 42 0.999 0.5
s32 S32 27 44 0.999 0.5
s33 S33 39 55 0.999 0.5
s34 S34 40 61 0.999 0.5
s35 S35 39 59 0.999 0.5
s36 S36 28 47 0.999 0.5
s37 S37 30 44 0.999 0.5
s38 S38 43 61 0.999 0.5
s39 S39 22 47 0.999 0.5
s40 S40 22 36 0.999 0.5
s41 S41 33 52 0.999 0.5
s42 S42 30 45 0.999 0.5
s43 S43 25 42 0.999 0.5
s44 S44 39 61 0.999 0.5
s45 S45 35 57 0.999 0.5
s46 S46 43 56 0.999 0.5
s47 S47 38 52 0.999 0.5
s48 S48 28 44 0.999 0.5
s49 S49 37 48 0.999 0.5
s50 S50 27 42 0.999 0.5
s51 S51 30 51 0.999 0.5
s52 S52 29 46 0.999 0.5
s53 S53 43 63 0.999 0.5
s54 S54 39 57 0.999 0.5
s55 S55 29 51 0.999 0.5
s56 S56 33 49 0.999 0.5
s57 S57 33 53 0.999 0.5
s58 S58 33 52 0.999 0.5
s59 S59 31 50 0.999 0.5
s60 S60 30 49 0.999 0.5
s61 S61 40 54 0.999 0.5
s62 S62 26 41 0.999 0.5
s63 S63 29 45 0.999 0.5
s64 S64 32 50 0.999 0.5
s65 S65 33 44 0.999 0.5
s66 S66 30 54 0.999 0.5
s67 S67 37 51 0.999 0.5
s68 S68 31 45 0.999 0.5
s69 S69 35 59 0.999 0.5
s70 S70 33 60 0.999 0.5
s71 S71 20 36 0.999 0.5
s72 S72 27 47 0.999 0.5
s73 S73 37 50 0.999 0.5
s74 S74 31 47 0.999 0.5
s75 S75 39 61 0.999 0.5
s76 S76 42 62 0.999 0.5
s77 S77 33 52 0.999 0.5
s78 S78 38 52 0.999 0.5
s79 S79 28 46 0.999 0.5
s80 S80 39 59 0.999 0.5
s81 S81 27 49 0.999 0.5
s82 S82 38 59 0.999 0.5
s83 S83 37 55 0.999 0.5
s84 S84 24 37 0.999 0.5
s85 S85 32 46 0.999 0.5
s86 S86 29 46 0.999 0.5
s87 S87 32 47 0.999 0.5
s88 S88 32 45 0.999 0.5
s89 S89 18 47 0.999 0.5
s90 S90 24 48 0.999 0.5
s91 S91 33 54 0.999 0.5
s92 S92 32 49 0.999 0.5
s93 S93 32 47 0.999 0.5
s94 S94 35 57 0.999 0.5
s95 S95 27 45 0.999 0.5
s96 S96 36 55 0.999 0.5
s97 S97 33 56 0.999 0.5
s98 S98 32 56 0.999 0.5
s99 S99 31 52 0.999 0.5
s100 S100 43 50 0.999 0.5
s101 S101 33 49 0.999 0.5
s102 S102 30 42 0.999 0.5
s103 S103 37 50 0.999 0.5
s104 S104 50 61 0.999 0.5
s105 S105 29 43 0.999 0.5
s106 S106 37 45 0.999 0.5
s107 S107 38 47 0.999 0.5
s108 S108 38 46 0.999 0.5
s109 S109 37 49 0.999 0.5
s110 S110 48 62 0.999 0.5
s111 S111 50 63 0.999 0.5
s112 S112 52 61 0.999 0.5
s113 S113 33 43 0.999 0.5
s114 S114 48 61 0.999 0.5
s115 S115 40 51 0.999 0.5
s116 S116 42 54 0.999 0.5
s117 S117 45 60 0.999 0.5
s118 S118 40 53 0.999 0.5
s119 S119 39 55 0.999 0.5
s120 S120 33 43 0.999 0.5
s121 S121 31 45 0.999 0.5
s122 S122 36 48 0.999 0.5
s123 S123 32 42 0.999 0.5
s124 S124 42 51 0.999 0.5
s125 S125 29 40 0.999 0.5
s126 S126 28 38 0.999 0.5
s127 S127 40 52 0.999 0.5
s128 S128 41 58 0.999 0.5
s129 S129 37 51 0.999 0.5
s130 S130 38 50 0.999 0.5
s131 S131 40 48 0.999 0.5
s132 S132 37 47 0.999 0.5
s133 S133 48 61 0.999 0.5
s134 S134 51 69 0.999 0.5
s135 S135 40 48 0.999 0.5
s136 S136 43 53 0.999 0.5
s137 S137 33 41 0.999 0.5
s138 S138 46 54 0.999 0.5
s139 S139 48 58 0.999 0.5
s140 S140 42 50 0.999 0.5
s141 S141 53 66 0.999 0.5
s142 S142 35 44 0.999 0.5
s143 S143 37 49 0.999 0.5
s144 S144 34 45 0.999 0.5
s145 S145 39 50 0.999 0.5
s146 S146 43 60 0.999 0.5
s147 S147 41 58 0.999 0.5
s148 S148 54 62 0.999 0.5
s149 S149 44 62 0.999 0.5
s150 S150 40 49 0.999 0.5
s151 S151 37 46 0.999 0.5
s152 S152 45 59 0.999 0.5
s153 S153 39 49 0.999 0.5
s154 S154 33 39 0.999 0.5
s155 S155 44 52 0.999 0.5
s156 S156 30 43 0.999 0.5
s157 S157 39 49 0.999 0.5
s158 S158 38 49 0.999 0.5
s159 S159 39 47 0.999 0.5
s160 S160 39 51 0.999 0.5
s161 S161 42 50 0.999 0.5
s162 S162 39 56 0.999 0.5
s163 S163 39 51 0.999 0.5
s164 S164 40 53 0.999 0.5
s165 S165 31 47 0.999 0.5
s166 S166 33 44 0.999 0.5
s167 S167 47 62 0.999 0.5
s168 S168 36 52 0.999 0.5
s169 S169 39 52 0.999 0.5
s170 S170 37 48 0.999 0.5
s171 S171 43 53 0.999 0.5
s172 S172 48 60 0.999 0.5
s173 S173 39 49 0.999 0.5
s174 S174 51 65 0.999 0.5
s175 S175 36 55 0.999 0.5
s176 S176 40 51 0.999 0.5
s177 S177 44 61 0.999 0.5
s178 S178 31 45 0.999 0.5
s179 S179 40 52 0.999 0.5
s180 S180 35 48 0.999 0.5
s181 S181 42 52 0.999 0.5
s182 S182 41 50 0.999 0.5
s183 S183 40 46 0.999 0.5
s184 S184 44 53 0.999 0.5
s185 S185 43 58 0.999 0.5
s186 S186 28 41 0.999 0.5
s187 S187 35 47 0.999 0.5
s188 S188 35 44 0.999 0.5
s189 S189 46 57 0.999 0.5
s190 S190 47 56 0.999 0.5
s191 S191 38 44 0.999 0.5
s192 S192 36 47 0.999 0.5
s193 S193 41 54 0.999 0.5
s194 S194 46 59 0.999 0.5
s195 S195 40 62 0.999 0.5
s196 S196 32 47 0.999 0.5
s197 S197 45 56 0.999 0.5
s198 S198 40 53 0.999 0.5
s199 S199 39 52 0.999 0.5
s200 S200 46 56 0.999 0.5
s201 S201 50 62 0.999 0.5
s202 S202 52 57 0.999 0.5
s203 S203 35 40 0.999 0.5
s204 S204 36 48 0.999 0.5
s205 S205 38 49 0.999 0.5
s206 S206 36 43 0.999 0.5
s207 S207 48 56 0.999 0.5
s208 S208 36 40 0.999 0.5
s209 S209 50 59 0.999 0.5
s210 S210 49 61 0.999 0.5
s211 S211 40 49 0.999 0.5
s212 S212 43 49 0.999 0.5
s213 S213 50 58 0.999 0.5
s214 S214 45 50 0.999 0.5
s215 S215 44 50 0.999 0.5
s216 S216 39 43 0.999 0.5
s217 S217 40 49 0.999 0.5
s218 S218 37 43 0.999 0.5
s219 S219 37 43 0.999 0.5
s220 S220 48 53 0.999 0.5
s221 S221 42 51 0.999 0.5
s222 S222 38 43 0.999 0.5
s223 S223 37 46 0.999 0.5
s224 S224 53 66 0.999 0.5
s225 S225 39 44 0.999 0.5
s226 S226 36 44 0.999 0.5
s227 S227 44 48 0.999 0.5
s228 S228 45 52 0.999 0.5
s229 S229 51 57 0.999 0.5
s230 S230 43 51 0.999 0.5
s231 S231 58 68 0.999 0.5
s232 S232 44 50 0.999 0.5
s233 S233 43 49 0.999 0.5
s234 S234 38 44 0.999 0.5
s235 S235 50 57 0.999 0.5
s236 S236 39 49 0.999 0.5
s237 S237 39 46 0.999 0.5
s238 S238 46 49 0.999 0.5
s239 S239 58 66 0.999 0.5
s240 S240 38 47 0.999 0.5
s241 S241 39 45 0.999 0.5
s242 S242 53 64 0.999 0.5
s243 S243 45 51 0.999 0.5
s244 S244 36 43 0.999 0.5
s245 S245 42 49 0.999 0.5
s246 S246 35 43 0.999 0.5
s247 S247 39 45 0.999 0.5
s248 S248 36 43 0.999 0.5
s249 S249 49 54 0.999 0.5
s250 S250 56 60 0.999 0.5
s251 S251 54 60 0.999 0.5
s252 S252 42 48 0.999 0.5
s253 S253 55 63 0.999 0.5
s254 S254 34 40 0.999 0.5
s255 S255 44 52 0.999 0.5
s256 S256 39 44 0.999 0.5
s257 S257 40 49 0.999 0.5
s258 S258 53 60 0.999 0.5
s259 S259 53 62 0.999 0.5
s260 S260 30 35 0.999 0.5
s261 S261 44 50 0.999 0.5
s262 S262 45 49 0.999 0.5
s263 S263 43 48 0.999 0.5
s264 S264 42 48 0.999 0.5
s265 S265 33 42 0.999 0.5
s266 S266 46 53 0.999 0.5
s267 S267 34 40 0.999 0.5
s268 S268 39 46 0.999 0.5
s269 S269 44 46 0.999 0.5
s270 S270 53 58 0.999 0.5
s271 S271 38 46 0.999 0.5
s272 S272 43 48 0.999 0.5
s273 S273 37 43 0.999 0.5
s274 S274 45 53 0.999 0.5
s275 S275 51 59 0.999 0.5
s276 S276 42 47 0.999 0.5
s277 S277 41 45 0.999 0.5
s278 S278 49 52 0.999 0.5
s279 S279 49 54 0.999 0.5
s280 S280 32 38 0.999 0.5
s281 S281 49 54 0.999 0.5
s282 S282 53 62 0.999 0.5
s283 S283 41 44 0.999 0.5
s284 S284 38 46 0.999 0.5
s285 S285 41 53 0.999 0.5
s286 S286 51 60 0.999 0.5
s287 S287 47 52 0.999 0.5
s288 S288 50 52 0.999 0.5
s289 S289 41 53 0.999 0.5
s290 S290 44 51 0.999 0.5
s291 S291 39 47 0.999 0.5
s292 S292 41 48 0.999 0.5
s293 S293 48 56 0.999 0.5
s294 S294 40 45 0.999 0.5
s295 S295 43 48 0.999 0.5
s296 S296 47 52 0.999 0.5
s297 S297 37 40 0.999 0.5
s298 S298 34 38 0.999 0.5
s299 S299 46 54 0.999 0.5
s300 S300 53 54 0.999 0.5
s301 S301 41 44 0.999 0.5
s302 S302 45 48 0.999 0.5
s303 S303 49 55 0.999 0.5
s304 S304 44 48 0.999 0.5
s305 S305 57 62 0.999 0.5
s306 S306 60 66 0.999 0.5
s307 S307 40 42 0.999 0.5
s308 S308 37 40 0.999 0.5
s309 S309 44 47 0.999 0.5
s310 S310 54 56 0.999 0.5
s311 S311 47 53 0.999 0.5
s312 S312 48 49 0.999 0.5
s313 S313 48 49 0.999 0.5
s314 S314 49 53 0.999 0.5
s315 S315 53 57 0.999 0.5
s316 S316 48 50 0.999 0.5
s317 S317 42 46 0.999 0.5
s318 S318 43 45 0.999 0.5
s319 S319 36 40 0.999 0.5
s320 S320 49 52 0.999 0.5
s321 S321 44 46 0.999 0.5
s322 S322 53 56 0.999 0.5
s323 S323 46 49 0.999 0.5
s324 S324 51 52 0.999 0.5
s325 S325 49 54 0.999 0.5
s326 S326 47 54 0.999 0.5
s327 S327 55 59 0.999 0.5
s328 S328 34 35 0.999 0.5
s329 S329 40 41 0.999 0.5
s330 S330 59 64 0.999 0.5
s331 S331 42 44 0.999 0.5
s332 S332 49 53 0.999 0.5
s333 S333 39 41 0.999 0.5
s334 S334 55 59 0.999 0.5
s335 S335 35 39 0.999 0.5
s336 S336 37 46 0.999 0.5
s337 S337 55 62 0.999 0.5
s338 S338 27 34 0.999 0.5
s339 S339 50 52 0.999 0.5
s340 S340 45 52 0.999 0.5
s341 S341 48 50 0.999 0.5
s342 S342 47 50 0.999 0.5
s343 S343 46 51 0.999 0.5
s344 S344 54 59 0.999 0.5
s345 S345 50 51 0.999 0.5
s346 S346 41 43 0.999 0.5
s347 S347 45 46 0.999 0.5
s348 S348 51 54 0.999 0.5
s349 S349 45 47 0.999 0.5
s350 S350 45 49 0.999 0.5
s351 S351 37 43 0.999 0.5
s352 S352 54 59 0.999 0.5
s353 S353 34 36 0.999 0.5
s354 S354 65 66 0.999 0.5
s355 S355 42 46 0.999 0.5
s356 S356 51 55 0.999 0.5
s357 S357 43 49 0.999 0.5
s358 S358 43 49 0.999 0.5
s359 S359 40 42 0.999 0.5
s360 S360 45 48 0.999 0.5
s361 S361 56 58 0.999 0.5
s362 S362 53 56 0.999 0.5
s363 S363 58 63 0.999 0.5
s364 S364 39 41 0.999 0.5
s365 S365 52 55 0.999 0.5
s366 S366 37 39 0.999 0.5
s367 S367 51 54 0.999 0.5
s368 S368 45 48 0.999 0.5
s369 S369 56 58 0.999 0.5
s370 S370 62 65 0.999 0.5
s371 S371 41 44 0.999 0.5
s372 S372 42 45 0.999 0.5
s373 S373 37 43 0.999 0.5
s374 S374 52 56 0.999 0.5
s375 S375 50 55 0.999 0.5
s376 S376 44 46 0.999 0.5
s377 S377 44 46 0.999 0.5
s378 S378 42 46 0.999 0.5
s379 S379 42 47 0.999 0.5
s380 S380 52 54 0.999 0.5
s381 S381 48 51 0.999 0.5
s382 S382 45 45 0.999 0.5
s383 S383 49 51 0.999 0.5
s384 S384 51 54 0.999 0.5
s385 S385 49 51 0.999 0.5
s386 S386 49 50 0.999 0.5
s387 S387 41 42 0.999 0.5
s388 S388 43 45 0.999 0.5
s389 S389 47 50 0.999 0.5
s390 S390 51 53 0.999 0.5
s391 S391 43 45 0.999 0.5
s392 S392 36 36 0.999 0.5
s393 S393 46 49 0.999 0.5
s394 S394 46 47 0.999 0.5
s395 S395 29 33 0.999 0.5
s396 S396 46 50 0.999 0.5
s397 S397 49 54 0.999 0.5
s398 S398 51 56 0.999 0.5
s399 S399 57 62 0.999 0.5
s400 S400 57 58 0.999 0.5
s401 S401 52 55 0.999 0.5
s402 S402 45 47 0.999 0.5
s403 S403 40 41 0.999 0.5
s404 S404 45 47 0.999 0.5
s405 S405 50 52 0.999 0.5
s406 S406 48 49 0.999 0.5
s407 S407 46 46 0.999 0.5
s408 S408 63 63 0.999 0.5
s409 S409 45 45 0.999 0.5
s410 S410 37 38 0.999 0.5
s411 S411 66 66 0.999 0.5
s412 S412 47 49 0.999 0.5
s413 S413 52 53 0.999 0.5
s414 S414 48 49 0.999 0.5
s415 S415 51 53 0.999 0.5
s416 S416 46 47 0.999 0.5
s417 S417 49 50 0.999 0.5
s418 S418 38 39 0.999 0.5
s419 S419 47 47 0.999 0.5
s420 S420 53 54 0.999 0.5
s421 S421 47 47 0.999 0.5
s422 S422 41 43 0.999 0.5
s423 S423 39 40 0.999 0.5
s424 S424 35 38 0.999 0.5
s425 S425 43 44 0.999 0.5
s426 S426 51 53 0.999 0.5
s427 S427 51 51 0.999 0.5
s428 S428 45 46 0.999 0.5
s429 S429 41 42 0.999 0.5
s430 S430 56 57 0.999 0.5
s431 S431 59 60 0.999 0.5
s432 S432 32 32 0.999 0.5
s433 S433 43 44 0.999 0.5
s434 S434 55 55 0.999 0.5
s435 S435 49 49 0.999 0.5
s436 S436 50 51 0.999 0.5
s437 S437 56 56 0.999 0.5
s438 S438 46 46 0.999 0.5
s439 S439 67 68 0.999 0.5
s440 S440 56 57 0.999 0.5
s441 S441 48 48 0.999 0.5
s442 S442 62 62 0.999 0.5
s443 S443 43 45 0.999 0.5
s444 S444 55 56 0.999 0.5
s445 S445 38 40 0.999 0.5
s446 S446 54 57 0.999 0.5
s447 S447 37 37 0.999 0.5
s448 S448 45 47 0.999 0.5
s449 S449 52 52 0.999 0.5
s450 S450 52 53 0.999 0.5
s451 S451 50 54 0.999 0.5
s452 S452 60 61 0.999 0.5
s453 S453 51 51 0.999 0.5
s454 S454 48 49 0.999 0.5
s455 S455 55 56 0.999 0.5
s456 S456 47 48 0.999 0.5
s457 S457 54 55 0.999 0.5
s458 S458 51 52 0.999 0.5
s459 S459 56 57 0.999 0.5
s460 S460 50 51 0.999 0.5
s461 S461 47 47 0.999 0.5
s462 S462 57 58 0.999 0.5
s463 S463 44 47 0.999 0.5
s464 S464 56 57 0.999 0.5
s465 S465 35 37 0.999 0.5
s466 S466 69 71 0.999 0.5
s467 S467 58 58 0.999 0.5
s468 S468 52 55 0.999 0.5
s469 S469 47 47 0.999 0.5
s470 S470 43 43 0.999 0.5
s471 S471 63 63 0.999 0.5
s472 S472 51 52 0.999 0.5
s473 S473 43 44 0.999 0.5
s474 S474 62 64 0.999 0.5
s475 S475 47 47 0.999 0.5
s476 S476 57 58 0.999 0.5
s477 S477 41 43 0.999 0.5
s478 S478 45 47 0.999 0.5
s479 S479 56 56 0.999 0.5
s480 S480 51 52 0.999 0.5
s481 S481 42 44 0.999 0.5
s482 S482 48 49 0.999 0.5
s483 S483 55 57 0.999 0.5
s484 S484 45 47 0.999 0.5
s485 S485 48 48 0.999 0.5
s486 S486 53 55 0.999 0.5
s487 S487 35 36 0.999 0.5
s488 S488 51 51 0.999 0.5
s489 S489 57 58 0.999 0.5
s490 S490 64 64 0.999 0.5
s491 S491 41 41 0.999 0.5
s492 S492 48 50 0.999 0.5
s493 S493 61 63 0.999 0.5
s494 S494 50 52 0.999 0.5
s495 S495 53 53 0.999 0.5
s496 S496 50 52 0.999 0.5
s497 S497 63 63 0.999 0.5
s498 S498 51 52 0.999 0.5
s499 S499 52 54 0.999 0.5
