https://github.com/stamatak/standard-RAxML
Tip revision: d42a90c8fd8d6b7e308f82da2aa05fa44b98c017 authored by stamatak on 20 August 2013, 10:16:45 UTC
added some small cosmetic changes to the file output and some more verbose error messages.
added some small cosmetic changes to the file output and some more verbose error messages.
Tip revision: d42a90c
Makefile.AVX.PTHREADS.gcc
# Makefile August 2006 by Alexandros Stamatakis
# Makefile cleanup October 2006, Courtesy of Peter Cordes <peter@cordes.ca>
CC = gcc
CFLAGS = -D_USE_PTHREADS -D__SIM_SSE3 -O2 -D_GNU_SOURCE -msse3 -fomit-frame-pointer -funroll-loops -D__AVX #-Wall -pedantic -Wunused-parameter -Wredundant-decls -Wreturn-type -Wswitch-default -Wunused-value -Wimplicit -Wimplicit-function-declaration -Wimplicit-int -Wimport -Wunused -Wunused-function -Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast -Wmissing-declarations -Wmissing-prototypes -Wnested-externs -Wold-style-definition -Wstrict-prototypes -Wdeclaration-after-statement -Wpointer-sign -Wextra -Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value -Wunused-variable -Wformat -Wformat-nonliteral -Wparentheses -Wsequence-point -Wuninitialized -Wundef -Wbad-function-cast
LIBRARIES = -lm -pthread
RM = rm -f
objs = axml.o optimizeModel.o multiple.o searchAlgo.o topologies.o parsePartitions.o treeIO.o models.o bipartitionList.o rapidBootstrap.o evaluatePartialGenericSpecial.o evaluateGenericSpecial.o newviewGenericSpecial.o makenewzGenericSpecial.o classify.o fastDNAparsimony.o fastSearch.o leaveDropping.o rogueEPA.o ancestralStates.o avxLikelihood.o mem_alloc.o
all : raxmlHPC
GLOBAL_DEPS = axml.h globalVariables.h #mem_alloc.h compiler.h gcc.h ll_asm.h ll_list.h
raxmlHPC : $(objs)
$(CC) -o raxmlHPC-PTHREADS-AVX $(objs) $(LIBRARIES)
avxLikelihood.o : avxLikelihood.c $(GLOBAL_DEPS)
$(CC) $(CFLAGS) -mavx -c -o avxLikelihood.o avxLikelihood.c
fastDNAparsimony.o : fastDNAparsimony.c $(GLOBAL_DEPS)
$(CC) $(CFLAGS) -mavx -c -o fastDNAparsimony.o fastDNAparsimony.c
#rev_functions.o : rev_functions.c $(GLOBAL_DEPS)
classify.o : classify.c $(GLOBAL_DEPS)
evaluatePartialSpecialGeneric.o : evaluatePartialSpecialGeneric.c $(GLOBAL_DEPS)
bipartitionList.o : bipartitionList.c $(GLOBAL_DEPS)
optimizeModel.o : optimizeModel.c $(GLOBAL_DEPS)
multiple.o : multiple.c $(GLOBAL_DEPS)
axml.o : axml.c $(GLOBAL_DEPS)
searchAlgo.o : searchAlgo.c $(GLOBAL_DEPS)
topologies.o : topologies.c $(GLOBAL_DEPS)
parsePartitions.o : parsePartitions.c $(GLOBAL_DEPS)
treeIO.o : treeIO.c $(GLOBAL_DEPS)
models.o : models.c $(GLOBAL_DEPS)
rapidBootstrap.o : rapidBootstrap.c $(GLOBAL_DEPS)
evaluatePartialGenericSpecial.o : evaluatePartialGenericSpecial.c $(GLOBAL_DEPS)
evaluateGenericSpecial.o : evaluateGenericSpecial.c $(GLOBAL_DEPS)
newviewGenericSpecial.o : newviewGenericSpecial.c $(GLOBAL_DEPS)
makenewzGenericSpecial.o : makenewzGenericSpecial.c $(GLOBAL_DEPS)
fastSearch.o : fastSearch.c $(GLOBAL_DEPS)
leaveDropping.o : leaveDropping.c $(GLOBAL_DEPS)
ancestralStates.o : ancestralStates.c $(GLOBAL_DEPS)
mem_alloc.o : mem_alloc.c $(GLOBAL_DEPS)
clean :
$(RM) *.o raxmlHPC-PTHREADS-AVX